- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 5 x MG: MAGNESIUM ION(Non-covalent)
- 2 x APC: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER(Non-covalent)
APC.4: 15 residues within 4Å:- Chain A: Y.47, G.48, S.49, K.52, S.59, D.60, E.62, L.217, N.218, K.221
- Chain B: R.185, R.190
- Ligands: MG.1, MG.2, CLY.5
18 PLIP interactions:14 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:S.49, A:S.49, A:K.52, A:K.52, A:S.59, A:D.60, A:L.217
- Water bridges: A:G.48, A:K.52, A:Y.58, A:R.107, A:R.107, A:K.221, B:R.190, B:R.190
- Salt bridges: A:K.221, B:R.185, B:R.190
APC.8: 15 residues within 4Å:- Chain A: R.185, R.190
- Chain B: Y.47, G.48, S.49, K.52, S.59, D.60, E.62, L.217, N.218, K.221
- Ligands: MG.6, MG.7, CLY.9
19 PLIP interactions:15 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:S.49, B:S.49, B:K.52, B:K.52, B:S.59, B:D.60, B:L.217
- Water bridges: B:G.48, B:K.52, B:Y.58, B:R.107, B:R.107, B:N.218, B:K.221, A:R.190, A:R.190
- Salt bridges: B:K.221, A:R.185, A:R.190
- 2 x CLY: CLINDAMYCIN(Non-covalent)
CLY.5: 12 residues within 4Å:- Chain A: Y.47, E.62, Y.64, Y.95, E.109, H.111, F.124, S.127, I.130, M.136
- Ligands: MG.2, APC.4
10 PLIP interactions:9 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:Y.47, A:Y.47, A:Y.64, A:Y.95, A:F.124, A:I.130
- Hydrogen bonds: A:Y.47
- Water bridges: A:D.60, A:E.109, B:R.190
CLY.9: 10 residues within 4Å:- Chain B: Y.47, E.62, Y.64, Y.95, E.109, F.124, S.127, I.130
- Ligands: MG.7, APC.8
13 PLIP interactions:12 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:Y.47, B:Y.47, B:Y.64, B:Y.95, B:F.124, B:F.124, B:I.130
- Hydrogen bonds: B:Y.47
- Water bridges: B:Y.47, B:Y.47, B:D.60, B:E.109, A:R.190
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Morar, M. et al., Structure and mechanism of the lincosamide antibiotic adenylyltransferase LinB. Structure (2009)
- Release Date
- 2009-11-03
- Peptides
- Lincosamide nucleotidyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 5 x MG: MAGNESIUM ION(Non-covalent)
- 2 x APC: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER(Non-covalent)
- 2 x CLY: CLINDAMYCIN(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Morar, M. et al., Structure and mechanism of the lincosamide antibiotic adenylyltransferase LinB. Structure (2009)
- Release Date
- 2009-11-03
- Peptides
- Lincosamide nucleotidyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B