SMTL ID : 3jzd.1 (1 other biounit)

Crystal structure of Putative alcohol dehedrogenase (YP_298327.1) from RALSTONIA EUTROPHA JMP134 at 2.10 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 23 residues within 4Å: Chain A: T.44, N.46, Q.47, M.71, H.72, G.98, G.99, S.100, K.106, T.121, T.122, A.124, S.126, T.129, V.131, K.140, L.159, T.160, G.162, L.163, L.167, L.234, H.257 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:A.124, A:L.234 Hydrogen bonds: A:T.44, A:N.46, A:Q.47, A:H.72, A:H.72, A:G.98, A:G.99, A:S.100, A:S.100, A:S.100, A:T.121, A:T.122, A:V.131, A:K.140 Water bridges: A:T.101, A:S.126, A:G.133 NAD.8: 22 residues within 4Å: Chain B: T.44, N.46, Q.47, H.72, G.98, G.99, S.100, K.106, T.121, T.122, A.124, S.126, T.129, V.131, K.140, L.159, T.160, G.162, L.163, L.167, L.234, H.257 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:A.124, B:L.234 Hydrogen bonds: B:T.44, B:T.44, B:N.46, B:Q.47, B:H.72, B:H.72, B:G.99, B:S.100, B:S.100, B:T.121, B:T.121, B:T.122, B:T.122, B:T.129, B:V.131, B:K.140, B:H.257 Water bridges: B:N.46, B:G.98, B:G.98, B:S.126, B:G.133

2 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.2: 1 residues within 4Å: Chain A: D.326 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.326, A:D.326, H2O.6, H2O.9 CA.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: M.280, R.284, S.293, A.294 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain B: M.280, R.284, S.293, A.294 Ligand excluded by PLIP

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 4 residues within 4Å: Chain A: F.253, N.254, I.314, G.315 No protein-ligand interaction detected (PLIP) PEG.6: 3 residues within 4Å: Chain A: T.287, G.288, Q.292 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.304 PEG.10: 4 residues within 4Å: Chain B: T.287, G.288, A.289, Q.292 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.304, B:R.304

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.7: 8 residues within 4Å: Chain A: F.19, A.21, G.22, S.23, Q.26 Chain B: P.7, F.8, I.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.26 PG4.11: 9 residues within 4Å: Chain A: P.7, F.8, I.9 Chain B: F.19, A.21, G.22, S.23, S.25, Q.26 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.25, B:Q.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Putative alcohol dehedrogenase (YP_298327.1) from RALSTONIA EUTROPHA JMP134 at 2.10 A resolution. To be published

Release Date

2009-10-06

Peptides

Iron-containing alcohol dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Iron-containing alcohol dehydrogenase

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