- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 8 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.4: 6 residues within 4Å:- Chain A: C.288, G.289, C.290
- Chain B: G.238, G.239
- Ligands: BME.5
No protein-ligand interaction detected (PLIP)BME.5: 5 residues within 4Å:- Chain A: T.135, H.279, R.283, C.290
- Ligands: BME.4
2 PLIP interactions:2 interactions with chain A- Water bridges: A:H.279, A:R.283
BME.10: 6 residues within 4Å:- Chain A: G.238, G.239
- Chain B: C.288, G.289, C.290
- Ligands: BME.11
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.289
BME.11: 3 residues within 4Å:- Chain B: H.279, C.290
- Ligands: BME.10
2 PLIP interactions:2 interactions with chain B- Water bridges: B:H.279, B:R.283
BME.18: 6 residues within 4Å:- Chain C: C.288, G.289, C.290
- Chain D: G.238, G.239
- Ligands: BME.19
No protein-ligand interaction detected (PLIP)BME.19: 5 residues within 4Å:- Chain C: T.135, H.279, R.283, C.290
- Ligands: BME.18
2 PLIP interactions:2 interactions with chain C- Water bridges: C:R.283, C:R.283
BME.24: 6 residues within 4Å:- Chain C: G.238, G.239
- Chain D: C.288, G.289, C.290
- Ligands: BME.25
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:G.289
BME.25: 4 residues within 4Å:- Chain D: H.279, C.290
- Ligands: BME.24, ACY.27
No protein-ligand interaction detected (PLIP)- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.6: 6 residues within 4Å:- Chain A: K.197, D.217, Y.218, Q.326, F.327, G.329
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.197, A:Y.218
- Water bridges: A:G.329
PGE.20: 6 residues within 4Å:- Chain C: K.197, D.217, Y.218, Q.326, F.327, G.329
No protein-ligand interaction detected (PLIP)- 6 x ACY: ACETIC ACID(Non-functional Binders)
ACY.7: 8 residues within 4Å:- Chain A: H.43, R.45, N.69, T.134, T.135, A.277, H.279, A.291
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:A.277
- Hydrogen bonds: A:N.69, A:T.135
- Salt bridges: A:H.43, A:R.45, A:H.279
ACY.13: 7 residues within 4Å:- Chain B: H.43, R.45, N.69, A.277, H.279, A.291
- Ligands: ACY.14
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.69
- Salt bridges: B:H.43, B:R.45, B:H.279
ACY.14: 7 residues within 4Å:- Chain B: N.69, K.127, Y.129, H.164
- Ligands: ZN.8, ZN.9, ACY.13
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:Y.129
- Water bridges: B:L.247
- Salt bridges: B:H.164
ACY.21: 8 residues within 4Å:- Chain C: H.43, R.45, N.69, T.134, T.135, A.277, H.279, A.291
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:A.277
- Hydrogen bonds: C:N.69, C:A.291
- Salt bridges: C:H.43, C:R.45, C:H.279
ACY.27: 7 residues within 4Å:- Chain D: H.43, R.45, N.69, H.279, A.291
- Ligands: BME.25, ACY.28
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:N.69
- Salt bridges: D:H.43, D:R.45, D:H.279
ACY.28: 6 residues within 4Å:- Chain D: N.69, K.127, Y.129, H.164
- Ligands: ZN.23, ACY.27
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:Y.129
- Water bridges: D:L.247, D:L.247
- Salt bridges: D:H.164
- 2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.12: 6 residues within 4Å:- Chain B: K.197, D.217, Y.218, Q.326, F.327, G.329
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.197
- Water bridges: B:G.329
PG4.26: 7 residues within 4Å:- Chain D: G.158, K.197, D.217, Y.218, Q.326, F.327, G.329
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:K.197
- Water bridges: D:G.329
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Minasov, G. et al., 1.8 Angstrom Resolution Crystal Structure of Dihydroorotase (pyrC) from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2. TO BE PUBLISHED
- Release Date
- 2009-09-29
- Peptides
- Dihydroorotase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 8 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 6 x ACY: ACETIC ACID(Non-functional Binders)
- 2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Minasov, G. et al., 1.8 Angstrom Resolution Crystal Structure of Dihydroorotase (pyrC) from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2. TO BE PUBLISHED
- Release Date
- 2009-09-29
- Peptides
- Dihydroorotase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D