SMTL ID : 3k1m.2 (3 other biounits)

Crystal Structure of full-length BenM, R156H mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

homo-tetramer

Ligands

4 x IMD: IMIDAZOLE(Non-covalent)

IMD.1: 8 residues within 4Å: Chain A: L.104, L.105, I.108, F.144, L.159, I.269, Y.293 Ligands: CL.2 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.104 IMD.4: 8 residues within 4Å: Chain B: L.104, L.105, I.108, F.144, L.159, I.269, Y.293 Ligands: CL.5 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.293 Water bridges: B:L.104 IMD.7: 7 residues within 4Å: Chain C: L.105, I.108, F.144, L.159, I.269, Y.293 Ligands: CL.8 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:L.105, C:Y.293, C:Y.293 Water bridges: C:L.104 IMD.10: 7 residues within 4Å: Chain D: L.105, I.108, F.144, L.159, I.269, Y.293 Ligands: CL.11 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:L.105, D:Y.293 Water bridges: D:L.104

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: G.103, L.104, R.160, I.269 Ligands: IMD.1 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain B: G.103, L.104, R.160, I.269 Ligands: IMD.4 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain C: G.103, L.104, R.160, I.269 Ligands: IMD.7 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain D: G.103, L.104, R.160, I.269 Ligands: IMD.10 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: Y.124, M.126, R.139 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.139, A:R.139 GOL.6: 3 residues within 4Å: Chain B: Y.124, M.126, R.139 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.139, B:R.139 GOL.9: 5 residues within 4Å: Chain C: K.155, T.157, Y.286, N.303, W.304 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:K.155, C:T.157, C:N.303 GOL.12: 5 residues within 4Å: Chain D: K.155, T.157, Y.286, N.303, W.304 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:K.155, D:N.303 Water bridges: D:T.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruangprasert, A. et al., Structure of Full-length BenM. To be Published

Release Date

2010-09-29

Peptides

HTH-type transcriptional regulator benM: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
B

D
B

HTH-type transcriptional regulator benM

Related Entries With Identical Sequence