- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NI: NICKEL (II) ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.2: 3 residues within 4Å:- Chain A: P.154, K.155
- Ligands: CL.3
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.155
- Water bridges: A:A.76, A:A.76
NA.12: 4 residues within 4Å:- Chain B: F.156, F.157, T.158, D.159
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.159, B:D.159
- Water bridges: B:D.160
- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 1 residues within 4Å:- Ligands: NA.2
Ligand excluded by PLIPCL.8: 1 residues within 4Å:- Chain B: K.5
Ligand excluded by PLIPCL.10: 3 residues within 4Å:- Chain B: N.198, T.286
- Ligands: ACT.16
Ligand excluded by PLIPCL.11: 3 residues within 4Å:- Chain B: T.87, L.88, E.89
Ligand excluded by PLIPCL.13: 3 residues within 4Å:- Chain B: S.56, V.57, K.155
Ligand excluded by PLIPCL.14: 2 residues within 4Å:- Chain B: Q.98, K.99
Ligand excluded by PLIP- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.4: 3 residues within 4Å:- Chain A: S.110, K.112, S.137
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.110, A:S.137
- Water bridges: A:S.137
- Salt bridges: A:K.112
PO4.9: 5 residues within 4Å:- Chain B: A.76, Q.77, E.78, W.80, K.152
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.78
- Water bridges: B:N.75, B:E.78, B:K.155
PO4.15: 3 residues within 4Å:- Chain B: S.110, K.112, S.137
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:S.110, B:S.110, B:S.110, B:S.137
- Water bridges: B:S.110, B:S.137, B:S.137, B:H.141
- Salt bridges: B:K.112
- 2 x ACT: ACETATE ION(Non-functional Binders)
ACT.5: 5 residues within 4Å:- Chain A: Y.132, T.185, N.198, K.205, V.276
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:V.276
- Hydrogen bonds: A:T.185, A:N.198
- Salt bridges: A:K.205
ACT.16: 5 residues within 4Å:- Chain B: Y.132, T.185, N.198, K.205
- Ligands: CL.10
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Y.132, B:N.198
- Salt bridges: B:K.205
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
-
Mantri, M. et al., Crystal Structure of the 2-Oxoglutarate- and Fe(II)-Dependent Lysyl Hydroxylase JMJD6. J.Mol.Biol. (2010)
- Release Date
- 2009-11-03
- Peptides
- Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NI: NICKEL (II) ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
-
Mantri, M. et al., Crystal Structure of the 2-Oxoglutarate- and Fe(II)-Dependent Lysyl Hydroxylase JMJD6. J.Mol.Biol. (2010)
- Release Date
- 2009-11-03
- Peptides
- Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B