SMTL ID : 3k2p.3 (2 other biounits)

HIV-1 Reverse Transcriptase Isolated RnaseH Domain with the Inhibitor beta-thujaplicinol Bound at the Active Site

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

homo-dimer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: D.19, E.54, D.74 Ligands: MN.2, JTH.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.19, A:E.54, A:D.74 MN.2: 6 residues within 4Å: Chain A: D.19, H.115, D.125, R.133 Ligands: MN.1, JTH.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.19, A:D.125 MN.4: 5 residues within 4Å: Chain B: D.19, E.54, D.74 Ligands: MN.5, JTH.6 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.19, B:E.54, B:D.74 MN.5: 6 residues within 4Å: Chain B: D.19, H.115, D.125, R.133 Ligands: MN.4, JTH.6 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.19, B:D.125

2 x JTH: 2,7-dihydroxy-4-(propan-2-yl)cyclohepta-2,4,6-trien-1-one(Non-covalent)

JTH.3: 9 residues within 4Å: Chain A: D.19, G.20, E.54, D.74, H.115, D.125, R.133 Ligands: MN.1, MN.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.133 JTH.6: 8 residues within 4Å: Chain B: D.19, E.54, D.74, H.115, D.125, R.133 Ligands: MN.4, MN.5 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Himmel, D.M. et al., Structure of HIV-1 reverse transcriptase with the inhibitor beta-Thujaplicinol bound at the RNase H active site. Structure (2009)

Release Date

2010-02-09

Peptides

Reverse Transcriptase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reverse Transcriptase

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