SMTL ID : 3k2w.1 (1 other biounit)

CRYSTAL STRUCTURE OF betaine-aldehyde dehydrogenase FROM Pseudoalteromonas atlantica T6c

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: A.71, R.74, A.125, I.128, K.146, I.174, T.175, L.479 Ligands: GOL.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.74, A:K.146, A:I.174 GOL.3: 7 residues within 4Å: Chain A: I.132, L.133, P.134 Chain B: I.128, G.130, H.145, K.146 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.146, B:K.146 Water bridges: B:H.145 GOL.4: 8 residues within 4Å: Chain A: I.128, G.130, H.145, K.146 Chain B: I.132, L.133, P.134 Ligands: GOL.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.130, A:K.146 GOL.6: 5 residues within 4Å: Chain B: Y.143, I.486, E.488 Chain C: F.429, N.433 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Hydrogen bonds: B:Y.143, B:E.488, C:N.433 Water bridges: A:Y.143 GOL.9: 7 residues within 4Å: Chain C: Y.304, V.380, D.381, V.382, I.400, V.401, K.402 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.381, C:V.382, C:I.400, C:K.402 GOL.12: 8 residues within 4Å: Chain C: I.132, L.133, P.134 Chain D: I.128, G.130, H.145, K.146 Ligands: GOL.14 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:G.130, D:K.146 Water bridges: D:I.128 GOL.13: 8 residues within 4Å: Chain C: I.128, G.130, H.145, K.146 Chain D: I.132, L.133, P.134 Ligands: ACT.11 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:G.130, C:K.146 GOL.14: 9 residues within 4Å: Chain D: A.71, R.74, A.125, I.128, K.146, I.174, T.175, L.479 Ligands: GOL.12 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:R.74, D:R.74, D:A.125, D:K.146

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: G.260, K.261, A.262, G.419, L.420, S.421 Ligand excluded by PLIP CL.7: 7 residues within 4Å: Chain B: G.260, K.261, A.262, Y.418, G.419, L.420, S.421 Ligand excluded by PLIP CL.8: 7 residues within 4Å: Chain C: G.260, K.261, A.262, Y.418, G.419, L.420, S.421 Ligand excluded by PLIP CL.15: 7 residues within 4Å: Chain D: G.260, K.261, A.262, Y.418, G.419, L.420, S.421 Ligand excluded by PLIP

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 6 residues within 4Å: Chain B: A.270, D.271, H.425, T.426, Q.427, N.447 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:D.271, B:N.447 Hydrogen bonds: B:D.271 Salt bridges: B:H.425 ACT.10: 6 residues within 4Å: Chain C: A.270, D.271, H.425, T.426, Q.427, N.447 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:Q.427 Hydrogen bonds: C:D.271 Salt bridges: C:H.425 Water bridges: A:N.487 ACT.11: 6 residues within 4Å: Chain C: A.71, R.74, A.125, I.174, T.175 Ligands: GOL.13 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:A.71 Water bridges: C:A.125 Salt bridges: C:R.74 ACT.16: 6 residues within 4Å: Chain D: A.270, D.271, K.274, H.425, T.426, N.447 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:D.271, D:N.447 Hydrogen bonds: D:D.271, D:T.426 Water bridges: D:Q.427 Salt bridges: D:H.425

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., CRYSTAL STRUCTURE OF betaine-aldehyde dehydrogenase FROM Pseudoalteromonas atlantica. To be Published

Release Date

2009-10-20

Peptides

Betaine-aldehyde dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Betaine-aldehyde dehydrogenase

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