SMTL ID : 3k35.1 (6 other biounits)

Crystal Structure of Human SIRT6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.141, C.144, C.166, C.177 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.141, A:C.144, A:C.166, A:C.177

1 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

APR.2: 21 residues within 4Å: Chain A: G.52, A.53, G.54, T.57, D.63, F.64, R.65, W.71, Q.113, H.133, G.214, T.215, S.216, I.219, N.240, L.241, Q.242, G.256, Y.257, V.258 Ligands: UNX.9 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:A.53, A:G.54, A:T.57, A:T.57, A:F.64, A:R.65, A:R.65, A:W.71, A:T.215, A:S.216, A:S.216, A:N.240, A:L.241, A:Q.242, A:Q.242, A:V.258 Water bridges: A:E.22, A:A.58, A:Q.113, A:D.259 Salt bridges: A:R.65, A:R.65

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: K.33, R.253, H.255 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.33, A:R.253, A:H.255 SO4.4: 3 residues within 4Å: Chain A: P.67, H.68, R.76 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.76 Salt bridges: A:H.68, A:R.76 SO4.5: 2 residues within 4Å: Chain A: H.68, K.81 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.81 Water bridges: A:K.81 Salt bridges: A:H.68 SO4.6: 3 residues within 4Å: Chain A: R.205, R.231, R.232 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.205 Salt bridges: A:R.205, A:R.231, A:R.232

3 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) UNX.8: 1 residues within 4Å: Ligands: UNX.9 No protein-ligand interaction detected (PLIP) UNX.9: 2 residues within 4Å: Ligands: APR.2, UNX.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pan, P.W. et al., Structure and biochemical functions of SIRT6. J.Biol.Chem. (2011)

Release Date

2009-12-08

Peptides

NAD-dependent deacetylase sirtuin-6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-dependent deacetylase sirtuin-6

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