SMTL ID : 3k3c.5 (4 other biounits)

The N-terminal PAS domain crystal structure of Rv1364c from Mycobacterium tuberculosis at 1.62

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

homo-tetramer

Ligands

2 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 13 residues within 4Å: Chain A: I.29, Y.47, F.50, S.51, Y.65, I.73, L.94, Y.98, R.106, F.108, F.110, L.127, D.131 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.47, A:F.50, A:Y.65, A:I.73, A:L.94, A:Y.98, A:Y.98, A:F.108, A:F.108, A:F.110, A:L.127 Salt bridges: A:R.106 PLM.8: 14 residues within 4Å: Chain B: I.29, F.50, S.51, Y.65, I.73, M.76, L.77, L.94, Y.98, R.106, F.108, F.110, L.127, D.131 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:F.50, B:Y.65, B:L.77, B:L.94, B:Y.98, B:F.108, B:F.108, B:F.110, B:L.127 Hydrogen bonds: B:D.131 Salt bridges: B:R.106

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: R.139, Q.140, E.143 Chain D: S.88, G.89, S.90 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain A Hydrogen bonds: D:S.88, A:Q.140 Water bridges: D:S.90, D:S.90 Salt bridges: A:R.139 SO4.9: 6 residues within 4Å: Chain B: R.139, Q.140, E.143 Chain C: S.88, G.89, S.90 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:S.88, B:Q.140 Water bridges: C:S.90, B:R.139 Salt bridges: B:R.139 SO4.15: 6 residues within 4Å: Chain B: S.88, G.89, S.90 Chain C: R.139, Q.140, E.143 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain C Hydrogen bonds: B:S.88, C:Q.140 Water bridges: B:S.90, B:S.90, C:R.139, C:R.139 Salt bridges: C:R.139 SO4.16: 7 residues within 4Å: Chain C: E.69, G.70, Q.71, Q.72, I.73, Y.74, E.75 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:G.70, C:Q.72, C:Q.72, C:Y.74, C:E.75 Water bridges: C:R.62, C:Q.71, C:Q.71 SO4.17: 6 residues within 4Å: Chain A: S.88, G.89, S.90 Chain D: R.139, Q.140, E.143 7 PLIP interactions: 5 interactions with chain D, 2 interactions with chain A Hydrogen bonds: D:Q.140, D:E.143, A:S.88, A:S.90 Water bridges: D:R.139, D:R.139 Salt bridges: D:R.139 SO4.18: 7 residues within 4Å: Chain D: E.69, G.70, Q.71, Q.72, I.73, Y.74, E.75 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:G.70, D:Q.72, D:Q.72, D:Y.74, D:E.75 Water bridges: D:R.62, D:Q.71, D:Q.71

11 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: E.17, R.20, R.21 Chain B: W.9 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:W.9, A:R.20, A:R.20, A:R.21, A:R.21 GOL.4: 3 residues within 4Å: Chain A: R.39, P.60, E.63 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.39, A:R.39 Water bridges: A:R.62, A:E.63 GOL.5: 6 residues within 4Å: Chain A: D.109, F.110, V.111, D.130 Chain D: E.143 Ligands: GOL.11 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:D.109, D:E.143 Water bridges: A:D.109 GOL.6: 5 residues within 4Å: Chain A: Q.72, E.75, M.76, R.79, Q.87 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.72, A:E.75, A:E.75, A:Q.87 Water bridges: A:Q.87, A:Q.87 GOL.7: 5 residues within 4Å: Chain A: E.91, D.109, V.132, R.135, V.136 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.91, A:D.109, A:R.139 GOL.10: 3 residues within 4Å: Chain B: R.39, P.60, E.63 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.39 Water bridges: B:R.62 GOL.11: 6 residues within 4Å: Chain B: D.109, F.110, V.111, I.128, D.130 Ligands: GOL.5 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.143, C:E.143 GOL.12: 5 residues within 4Å: Chain B: E.91, D.109, V.132, R.135, V.136 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.109, B:R.139 GOL.13: 6 residues within 4Å: Chain B: A.4, A.5, M.7, D.8, T.12 Chain C: R.154 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:D.8, B:D.8, C:R.154, C:R.154 GOL.14: 4 residues within 4Å: Chain B: Q.72, E.75, M.76, R.79 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.72 Water bridges: B:R.79, B:Q.87, B:Q.87 GOL.19: 4 residues within 4Å: Chain C: I.128, D.130 Chain D: A.28, I.128 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:D.130 Water bridges: C:D.130, C:D.130, D:V.129, D:D.130, D:D.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

King-Scott, J. et al., The N-terminal PAS domain crystal structure of Rv1364c from Mycobacterium tuberculosis at 1.62. To be Published

Release Date

2010-09-29

Peptides

Protein Rv1364c/MT1410: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Protein Rv1364c/MT1410

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