SMTL ID : 3k3j.1

P38alpha bound to novel DFG-out compound PF-00416121

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x F4C: 2-(4-fluorophenyl)-3-oxo-6-pyridin-4-yl-N-[2-(trifluoromethyl)benzyl]-2,3-dihydropyridazine-4-carboxamide(Non-covalent)

F4C.1: 17 residues within 4Å: Chain A: V.40, A.53, K.55, R.69, R.72, E.73, L.76, L.77, V.85, I.86, L.106, T.108, I.143, H.150, L.169, D.170, F.171 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:K.55, A:E.73, A:L.76, A:L.77, A:V.85, A:I.86, A:I.86, A:L.106, A:T.108, A:D.170 Hydrogen bonds: A:D.170 Water bridges: A:R.72

1 x I46: 2-fluoro-4-[4-(4-fluorophenyl)-1H-pyrazol-3-yl]pyridine(Non-covalent)

I46.2: 13 residues within 4Å: Chain A: P.193, E.194, L.197, W.199, L.234, P.244, L.248, K.251, I.252, I.261, L.293, D.294, S.295 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:P.193, A:E.194, A:L.197, A:W.199, A:L.234, A:P.244, A:L.248, A:L.248, A:I.252, A:L.293 Hydrogen bonds: A:S.295, A:S.295 Water bridges: A:S.253, A:D.296 pi-Stacking: A:W.199, A:W.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tecle, H. et al., The Design, Synthesis and Potential Utility of Fluorescence Probes that Target DFG-out Conformation of p38alpha for High Throughput Screening Binding Assay. Chem.Biol.Drug Des. (2009)

Release Date

2009-11-10

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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