SMTL ID : 3k3o.1

Crystal structure of the catalytic core domain of human PHF8 complexed with alpha-ketoglutarate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.1: 11 residues within 4Å: Chain A: N.105, I.107, L.152, T.160, H.163, D.165, Y.173, K.180, H.235, V.237 Ligands: FE2.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.107, A:V.237 Hydrogen bonds: A:N.105, A:T.160, A:T.160, A:Y.173 Water bridges: A:K.180 Salt bridges: A:H.163, A:K.180

1 x FE2: FE (II) ION(Non-covalent)

FE2.2: 4 residues within 4Å: Chain A: H.163, D.165, H.235 Ligands: AKG.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.163, A:D.165, A:H.235, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, L. et al., Structural insights into a novel histone demethylase PHF8. Cell Res. (2010)

Release Date

2010-01-19

Peptides

PHD finger protein 8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PHD finger protein 8

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