SMTL ID : 3k4n.1

Pyranose 2-oxidase F454A/S455A/Y456A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)(Non-covalent)

FAD.1: 31 residues within 4Å: Chain A: V.52, G.53, G.55, P.56, I.57, G.58, D.76, I.77, G.78, I.107, L.111, T.158, R.159, V.160, G.163, M.164, S.165, H.167, W.168, T.169, C.170, A.171, V.281, C.283, T.319, A.320, H.324, L.547, G.582, N.593, T.595 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:I.107, A:L.111, A:W.168, A:L.547 Hydrogen bonds: A:I.57, A:G.58, A:I.77, A:G.78, A:T.158, A:V.160, A:M.164, A:M.164, A:T.169, A:T.169, A:C.170, A:A.171, A:A.171, A:C.283, A:C.283, A:N.593, A:T.595, A:T.595 Water bridges: A:A.322 pi-Stacking: A:W.168, A:W.168 pi-Cation interactions: A:H.548 FAD.2: 33 residues within 4Å: Chain B: V.52, G.53, G.55, P.56, I.57, F.75, D.76, I.77, G.78, I.107, T.158, R.159, V.160, G.163, M.164, S.165, H.167, W.168, T.169, C.170, A.171, V.281, C.283, T.319, A.320, H.324, L.547, H.548, G.582, C.583, N.593, P.594, T.595 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:I.107, B:W.168, B:L.547 Hydrogen bonds: B:S.54, B:I.57, B:I.77, B:G.78, B:T.158, B:V.160, B:G.163, B:M.164, B:T.169, B:C.170, B:A.171, B:A.171, B:C.283, B:C.283, B:T.595 Water bridges: B:H.324, B:N.593 FAD.3: 31 residues within 4Å: Chain C: V.52, G.53, G.55, P.56, I.57, G.58, D.76, I.77, G.78, I.107, L.111, T.158, R.159, V.160, G.163, M.164, S.165, H.167, W.168, T.169, C.170, A.171, V.281, C.283, T.319, A.320, H.324, L.547, G.582, N.593, T.595 25 PLIP interactions: 25 interactions with chain C Hydrophobic interactions: C:I.107, C:L.111, C:W.168, C:L.547 Hydrogen bonds: C:I.57, C:G.58, C:I.77, C:G.78, C:T.158, C:V.160, C:M.164, C:M.164, C:T.169, C:C.170, C:A.171, C:A.171, C:C.283, C:C.283, C:N.593, C:T.595, C:T.595 Water bridges: C:A.322 pi-Stacking: C:W.168, C:W.168 pi-Cation interactions: C:H.548 FAD.4: 33 residues within 4Å: Chain D: V.52, G.53, G.55, P.56, I.57, F.75, D.76, I.77, G.78, I.107, T.158, R.159, V.160, G.163, M.164, S.165, H.167, W.168, T.169, C.170, A.171, V.281, C.283, T.319, A.320, H.324, L.547, H.548, G.582, C.583, N.593, P.594, T.595 20 PLIP interactions: 20 interactions with chain D Hydrophobic interactions: D:I.107, D:W.168, D:L.547 Hydrogen bonds: D:S.54, D:I.57, D:I.77, D:G.78, D:T.158, D:V.160, D:G.163, D:M.164, D:T.169, D:C.170, D:A.171, D:A.171, D:C.283, D:C.283, D:T.595, D:T.595 Water bridges: D:N.593

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Spadiut, O. et al., Importance of the gating segment in the substrate-recognition loop of pyranose 2-oxidase. Febs J. (2010)

Release Date

2010-05-12

Peptides

Pyranose 2-oxidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Pyranose 2-oxidase