SMTL ID : 3k5w.2 (2 other biounits)

Crystal structure of a Carbohydrate kinase (YjeF family)from Helicobacter pylori

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-tetramer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: G.56, D.57, N.58, I.124, G.125, S.126, H.127 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.56, A:D.57, A:N.58, A:G.125, A:S.126, A:H.127 Water bridges: A:G.56, A:G.59 Salt bridges: A:H.127 PO4.2: 7 residues within 4Å: Chain B: G.56, D.57, N.58, I.124, G.125, S.126, H.127 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.56, B:D.57, B:N.58, B:G.125, B:S.126, B:H.127 Water bridges: B:G.56, B:G.59 Salt bridges: B:H.127 PO4.3: 7 residues within 4Å: Chain C: G.56, D.57, N.58, I.124, G.125, S.126, H.127 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:G.56, C:D.57, C:N.58, C:G.125, C:S.126, C:H.127 Water bridges: C:G.56, C:G.59 Salt bridges: C:H.127 PO4.4: 7 residues within 4Å: Chain D: G.56, D.57, N.58, I.124, G.125, S.126, H.127 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:G.56, D:D.57, D:N.58, D:G.125, D:S.126, D:H.127 Water bridges: D:G.56, D:G.59 Salt bridges: D:H.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Satyanarayana, L. et al., Crystal structure of a Carbohydrate kinase (YjeF family)from Helicobacter pylori. To be Published

Release Date

2009-12-08

Peptides

Carbohydrate kinase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Carbohydrate kinase

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