SMTL ID : 3k65.1

Crystal Structure of Prethombin-2/Fragment-2 Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-mer

Ligands

2 x BU1: 1,4-BUTANEDIOL(Non-functional Binders)

BU1.1: 4 residues within 4Å: Chain A: A.46, L.47, G.80, P.82 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.46 Hydrogen bonds: A:G.80 BU1.2: 3 residues within 4Å: Chain A: K.81 Chain B: L.95, N.102 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:L.95, A:K.81 Hydrogen bonds: B:N.102 Water bridges: A:D.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adams, T.E. et al., Structural transitions during prothrombin activation: On the importance of fragment 2. Biochimie (2016)

Release Date

2010-09-29

Peptides

Prothrombin: A
Prothrombin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Prothrombin

Prothrombin