SMTL ID : 3k6l.2 (2 other biounits)

The structure of E.coli peptide deformylase (PDF) in complex with peptidomimetic ligand BB2827

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 5 residues within 4Å: Chain A: Q.51, C.91, H.133, H.137 Ligands: 2BB.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.91, A:H.133, A:H.137

1 x 2BB: (2S,3R)-N~4~-[(1S)-1-(dimethylcarbamoyl)-2,2-dimethylpropyl]-N~1~,2-dihydroxy-3-(2-methylpropyl)butanediamide(Non-covalent)

2BB.2: 18 residues within 4Å: Chain A: E.43, G.44, I.45, G.46, Q.51, I.87, E.88, E.89, G.90, C.91, L.92, R.98, L.126, C.130, H.133, E.134, H.137 Ligands: NI.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.45, A:E.89 Hydrogen bonds: A:I.45, A:G.46, A:Q.51, A:G.90, A:G.90, A:L.92, A:E.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, R.K.Y. et al., The structure of E.coli peptide deformylase (PDF) in complex with peptidomimetic ligand BB2827. To be Published

Release Date

2009-11-10

Peptides

Peptide deformylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Peptide deformylase

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