SMTL ID : 3k6s.3 (4 other biounits)

Structure of integrin alphaXbeta2 ectodomain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: A.40, A.41, N.42 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 6 residues within 4Å: Chain A: T.657, D.659, N.716, T.718, Y.741 Chain B: D.501 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.2: 3 residues within 4Å: Chain A: F.354, N.373, Q.376 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: T.676, N.678, R.679 No protein-ligand interaction detected (PLIP) NAG.5: 4 residues within 4Å: Chain A: T.801, V.834, N.880, T.887 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.887 NAG.9: 2 residues within 4Å: Chain B: A.92, N.94 No protein-ligand interaction detected (PLIP)

4 x CA: CALCIUM ION(Non-covalent)

CA.6: 6 residues within 4Å: Chain A: D.447, D.449, D.451, S.453, T.454, D.455 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.447, A:D.451, A:S.453 CA.7: 7 residues within 4Å: Chain A: D.511, V.512, N.513, G.514, D.515, L.517, D.519 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:L.517 CA.8: 6 residues within 4Å: Chain A: D.574, T.576, Q.577, D.578, L.580, D.582 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.574, A:T.576, A:D.578, A:L.580, A:D.582 CA.10: 5 residues within 4Å: Chain B: S.116, M.117, D.119, D.120, E.325 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:S.116, B:D.119, B:D.120, B:E.325, B:E.325

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, C. et al., Structure of an integrin with an alphaI domain, complement receptor type 4. Embo J. (2010)

Release Date

2010-01-12

Peptides

Integrin alpha-X: A
Integrin beta-2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Integrin alpha-X

Integrin beta-2

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