SMTL ID : 3k7t.1

Crystal structure of apo-form 6-hydroxy-L-nicotine oxidase, crystal form P3121

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 34 residues within 4Å: Chain A: V.7, G.8, G.9, G.10, F.11, S.12, L.30, E.31, G.32, G.37, G.38, R.39, A.40, G.56, G.57, Y.59, T.224, V.225, V.226, A.254, T.255, P.256, I.263, K.287, W.361, L.366, F.367, W.371, G.397, S.398, G.406, Y.407, I.408, A.411 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:K.287, A:W.371, A:W.371 Hydrogen bonds: A:G.9, A:G.10, A:F.11, A:S.12, A:S.12, A:G.32, A:R.39, A:A.40, A:Y.59, A:V.226, A:V.226, A:S.398, A:S.398, A:I.408 Salt bridges: A:R.39, A:R.39 FAD.3: 33 residues within 4Å: Chain B: V.7, G.8, G.9, G.10, F.11, S.12, L.30, E.31, G.32, G.37, G.38, R.39, G.56, G.57, Y.59, T.224, V.225, V.226, A.254, T.255, P.256, I.263, K.287, W.361, L.366, F.367, P.370, G.397, S.398, G.406, Y.407, I.408, A.411 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:R.39, B:K.287 Hydrogen bonds: B:G.9, B:G.10, B:S.12, B:G.32, B:R.39, B:Y.59, B:Y.59, B:V.226, B:V.226, B:S.398, B:S.398, B:S.398, B:Y.407, B:I.408 Water bridges: B:E.409 Salt bridges: B:R.39, B:R.39 pi-Stacking: B:W.371

2 x GP7: (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(pentadecanoyloxy)methyl]ethyl (12E)-hexadeca-9,12-dienoate(Non-covalent)

GP7.2: 21 residues within 4Å: Chain A: Q.99, A.100, F.101, V.111, T.115, L.118, F.159, L.160, W.163, A.164, M.180, I.191, L.192, V.195, L.196 Chain B: F.101, I.103, P.104, G.105, A.108 Ligands: GP7.4 16 PLIP interactions: 13 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:F.101, A:F.101, A:V.111, A:L.118, A:F.159, A:F.159, A:L.160, A:W.163, A:I.191, A:L.192, A:V.195, A:L.196, B:F.101, B:A.108 Hydrogen bonds: A:Q.99, B:G.105 GP7.4: 18 residues within 4Å: Chain A: I.103, P.104, G.105, S.106, A.108 Chain B: A.100, F.101, V.111, T.115, F.159, L.160, W.163, M.180, I.191, L.192, V.195, L.196 Ligands: GP7.2 12 PLIP interactions: 1 interactions with chain A, 11 interactions with chain B Hydrogen bonds: A:G.105 Hydrophobic interactions: B:F.101, B:F.101, B:F.159, B:F.159, B:L.160, B:W.163, B:I.191, B:L.192, B:L.192, B:V.195, B:L.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kachalova, G.S. et al., Crystal Structure Analysis of Free and Substrate-Bound 6-Hydroxy-l-Nicotine Oxidase from Arthrobacter nicotinovorans. J.Mol.Biol. (2010)

Release Date

2010-01-19

Peptides

6-hydroxy-L-nicotine oxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

6-hydroxy-L-nicotine oxidase