SMTL ID : 3k9j.1 (2 other biounits)

Transposase domain of Metnase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: D.51, D.143 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.51, A:D.51, H2O.3, H2O.3, H2O.5

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: L.97, I.98, H.99, Y.100, K.124 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.98, A:Y.100, A:Y.100, A:K.124 EDO.3: 6 residues within 4Å: Chain A: D.143, N.144, H.167, P.169, Y.170 Ligands: EDO.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.143, A:D.143, A:N.144, A:Y.170 EDO.4: 3 residues within 4Å: Chain A: P.169, Y.170 Ligands: EDO.3 No protein-ligand interaction detected (PLIP) EDO.5: 4 residues within 4Å: Chain A: I.109, T.110, S.111, P.147 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.109, A:S.111 EDO.6: 3 residues within 4Å: Chain B: H.184, Q.211, F.215 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Q.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goodwin, K.D. et al., Crystal structure of the human Hsmar1-derived transposase domain in the DNA repair enzyme Metnase. Biochemistry (2010)

Release Date

2010-07-14

Peptides

Histone-lysine N-methyltransferase SETMAR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Histone-lysine N-methyltransferase SETMAR

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