SMTL ID : 3k9x.2 (1 other biounit)

X-ray crystal structure of human fxa in complex with (S)-N-((2-METHYLBENZOFURAN-5-YLAMINO)(2-OXO-1-(2-OXO-2- (PYRROLIDIN-1-YL)ETHYL)AZEPAN-3- YLAMINO)METHYLENE)NICOTINAMIDE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MBM: N-{N'-(2-methyl-1-benzofuran-5-yl)-N-[(3S)-2-oxo-1-(2-oxo-2-pyrrolidin-1-ylethyl)azepan-3-yl]carbamimidoyl}pyridine-3-carboxamide(Non-covalent)

MBM.1: 18 residues within 4Å: Chain B: E.83, T.84, Y.85, E.135, F.162, D.179, A.180, C.181, Q.182, S.185, V.203, W.205, G.206, G.208, C.209, G.216, I.217, Y.218 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:Y.85, B:E.135, B:V.203, B:Y.218 Hydrogen bonds: B:Q.182, B:Q.182, B:G.206 Water bridges: B:S.185

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain B: D.56, N.58, Q.61, E.62, E.66 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.56, B:N.58, B:E.66, H2O.10, H2O.13

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain B: Y.173, D.174, R.211, K.214 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.214, B:K.214 Water bridges: B:Y.173, B:R.211

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: F.55 Chain B: L.109, P.110, L.225 2 PLIP interactions: 2 interactions with chain B Water bridges: B:E.111, B:E.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, Y. et al., Aroylguanidine-based factor Xa inhibitors: the discovery of BMS-344577. Bioorg.Med.Chem.Lett. (2009)

Release Date

2009-12-15

Peptides

PROTEIN (Coagulation factor X): A
PROTEIN (Coagulation factor X): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

PROTEIN (Coagulation factor X)

PROTEIN (Coagulation factor X)

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