SMTL ID : 3k9y.3 (2 other biounits)

Crystal structure of rat mitochondrial P450 24A1 S57D in complex with CYMAL-5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 25 residues within 4Å: Chain A: R.96, L.115, M.116, W.123, R.127, L.291, A.294, A.295, T.298, T.299, S.302, M.353, V.359, T.362, R.364, P.422, F.423, G.424, I.425, R.428, M.429, C.430, I.431, G.432, L.440 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:L.291, A:A.295, A:T.298, A:V.359, A:F.423, A:I.431, A:L.440 Hydrogen bonds: A:I.425, A:R.428 Salt bridges: A:R.96, A:R.96, A:R.127, A:R.364, A:R.428 Metal complexes: A:C.430 HEM.4: 25 residues within 4Å: Chain B: R.96, L.115, M.116, W.123, R.127, A.294, A.295, T.298, T.299, S.302, S.358, V.359, T.362, R.364, P.422, F.423, G.424, I.425, R.428, M.429, C.430, I.431, G.432, A.436, L.440 17 PLIP interactions: 17 interactions with chain B, Hydrophobic interactions: B:A.295, B:T.298, B:V.359, B:V.359, B:F.423, B:I.431, B:A.436, B:L.440 Hydrogen bonds: B:T.362, B:I.425, B:R.428 Salt bridges: B:R.96, B:R.96, B:R.127, B:R.364, B:R.428 Metal complexes: B:C.430

2 x CM5: 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE(Non-covalent)

CM5.2: 8 residues within 4Å: Chain A: M.214, S.215, F.217, G.218, K.219, M.221, V.222 Ligands: CM5.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.219, A:V.222 Hydrogen bonds: A:M.214 CM5.3: 11 residues within 4Å: Chain A: L.38, F.42, L.47, Q.50, L.69, I.99, F.361, H.465, G.467 Chain B: L.34 Ligands: CM5.2 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.38, A:L.38, A:F.42, A:L.47, B:L.34 Hydrogen bonds: A:Q.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Annalora, A.J. et al., Crystal structure of CYP24A1, a mitochondrial cytochrome P450 involved in vitamin D metabolism. J.Mol.Biol. (2010)

Release Date

2009-12-15

Peptides

1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial

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