SMTL ID : 3ka2.1

Crystal structure of chemically synthesized 203 amino acid 'covalent dimer' [L-Ala;Gly51']HIV-1 protease molecule complexed with MVT-101 reduced isostere inhibitor at 1.4 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x 2NC: N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide(Non-covalent)

2NC.1: 26 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, D.30, G.48, G.49, I.50, P.81, V.82, I.84, L.127, D.129, G.131, A.132, D.133, D.134, V.136, I.151, G.152, G.153, I.154, T.184, P.185, V.186, I.188 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:I.50, A:P.81, A:V.82, A:I.84, A:L.127, A:A.132, A:V.136, A:I.154, A:P.185, A:I.188 Hydrogen bonds: A:G.27, A:D.29, A:G.48, A:G.48, A:G.48, A:I.50, A:G.131, A:D.133, A:D.134, A:D.134, A:G.152, A:G.152 Water bridges: A:R.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Torbeev, V.Y. et al., Protein conformational dynamics in the mechanism of HIV-1 protease catalysis. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-04-27

Peptides

[L-Ala51;Gly51']HIV-1 protease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

[L-Ala51;Gly51']HIV-1 protease