SMTL ID : 3kao.1

Crystal structure of tagatose 1,6-diphosphate aldolase from Staphylococcus aureus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: Q.31, R.32, G.33, A.34, T.97, G.98 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:R.32, A:A.34, A:G.98 Water bridges: A:D.30, A:R.32, A:R.32, A:R.32, A:R.37, A:R.37 SO4.2: 9 residues within 4Å: Chain A: A.28, Q.31, S.252, A.253, G.254, L.278, C.279, G.280, R.281 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.31, A:S.252, A:S.252, A:A.253, A:G.254, A:G.280, A:R.281 Salt bridges: A:R.281 SO4.7: 4 residues within 4Å: Chain A: E.75, K.96, L.111, V.112 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.112 Water bridges: A:E.113 Salt bridges: A:K.96 SO4.10: 6 residues within 4Å: Chain B: Q.31, R.32, G.33, A.34, T.97, G.98 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:R.32, B:A.34, B:T.97, B:G.98 Water bridges: B:D.30, B:R.32, B:R.32, B:R.32, B:R.37, B:R.37 SO4.11: 9 residues within 4Å: Chain B: A.28, Q.31, S.252, A.253, G.254, L.278, C.279, G.280, R.281 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:Q.31, B:S.252, B:S.252, B:A.253, B:G.254, B:G.280, B:R.281 Salt bridges: B:R.281 SO4.16: 4 residues within 4Å: Chain B: E.75, K.96, L.111, V.112 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.112 Water bridges: B:E.113 Salt bridges: B:K.96

6 x ZN: ZINC ION(Non-covalent)

ZN.3: 1 residues within 4Å: Chain A: H.268 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.268, H2O.2, H2O.2, H2O.2 ZN.4: 3 residues within 4Å: Chain A: H.42, Q.289, E.293 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.42, A:E.293 ZN.5: 2 residues within 4Å: Chain A: E.166, K.208 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.166, A:E.166 ZN.12: 1 residues within 4Å: Chain B: H.268 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.268, H2O.18, H2O.18, H2O.18 ZN.13: 3 residues within 4Å: Chain B: H.42, Q.289, E.293 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.42, B:E.293 ZN.14: 2 residues within 4Å: Chain B: E.166, K.208 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.166, B:E.166

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 8 residues within 4Å: Chain A: E.95, K.96, G.98, Y.99, R.106, L.107, P.108, D.109 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.106, A:D.109 Water bridges: A:D.100 GOL.8: 5 residues within 4Å: Chain A: K.6, K.10, V.157, N.203, D.205 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.6, A:K.6, A:N.203 Water bridges: A:S.7, A:P.200, A:N.203 GOL.9: 4 residues within 4Å: Chain A: D.109 Chain B: K.96, D.109 Ligands: GOL.18 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:K.96, A:D.109 Water bridges: B:K.96, B:K.96, A:K.96, A:K.96, A:K.96, A:D.109 GOL.15: 8 residues within 4Å: Chain B: E.95, K.96, G.98, Y.99, R.106, L.107, P.108, D.109 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.106, B:D.109 Water bridges: B:D.100 GOL.17: 5 residues within 4Å: Chain B: K.6, K.10, V.157, N.203, D.205 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:K.6, B:K.6, B:N.203, B:D.205 Water bridges: B:S.7, B:P.200, B:N.203 GOL.18: 4 residues within 4Å: Chain A: K.96, D.109 Chain B: D.109 Ligands: GOL.9 9 PLIP interactions: 3 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:K.96, B:D.109 Water bridges: A:K.96, A:K.96, B:K.96, B:K.96, B:K.96, B:D.109, B:D.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, C. et al., Crystal structure of tagatose 1,6-diphosphate aldolase from Staphylococcus aureus. To be Published

Release Date

2009-10-27

Peptides

Tagatose 1,6-diphosphate aldolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Tagatose 1,6-diphosphate aldolase