SMTL ID : 3kb2.1 (1 other biounit)

Crystal Structure of YorR protein in complex with phosphorylated GDP from Bacillus subtilis, Northeast Structural Genomics Consortium Target SR256

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x G3D: GUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE(Non-covalent)

G3D.1: 10 residues within 4Å: Chain A: D.10, C.11, C.12, F.13, K.14, S.15, T.16, S.152, S.153 Ligands: MG.2 17 PLIP interactions: 16 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:C.11, A:C.12, A:F.13, A:K.14, A:S.15, A:T.16, A:T.16, A:S.153 Water bridges: A:K.14, A:K.14, A:S.15, A:R.115, A:D.154, B:R.115 Salt bridges: A:K.14 pi-Stacking: A:F.13, A:F.13 G3D.3: 10 residues within 4Å: Chain B: D.10, C.11, C.12, F.13, K.14, S.15, T.16, S.152, S.153 Ligands: MG.4 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:C.11, B:C.12, B:F.13, B:K.14, B:S.15, B:S.15, B:T.16, B:T.16, B:S.153, B:S.153, B:D.154 Water bridges: B:S.15, B:K.20 Salt bridges: B:K.14 pi-Stacking: B:F.13, B:F.13

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: S.15, D.61 Ligands: G3D.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.15, H2O.4, H2O.4, H2O.4, H2O.6 MG.4: 3 residues within 4Å: Chain B: S.15, D.61 Ligands: G3D.3 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:S.15, H2O.4, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Forouhar, F. et al., Northeast Structural Genomics Consortium Target SR256. To be Published

Release Date

2009-10-27

Peptides

SPBc2 prophage-derived uncharacterized protein yorR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SPBc2 prophage-derived uncharacterized protein yorR

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