SMTL ID : 3kbf.1

C. elegans Cu,Zn Superoxide Dismutase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-dimer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 6 residues within 4Å: Chain A: H.45, H.47, H.62, V.117, H.119 Ligands: SO4.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.45, A:H.47, A:H.119 CU.4: 6 residues within 4Å: Chain B: H.45, H.47, H.62, V.117, H.119 Ligands: SO4.6 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.45, B:H.47, B:H.119

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.62, H.70, H.79, D.82 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.62, A:H.70, A:H.79, A:D.82, A:D.82 ZN.5: 4 residues within 4Å: Chain B: H.62, H.70, H.79, D.82 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.62, B:H.70, B:H.79, B:D.82, B:D.82

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: H.47, H.62, H.119, T.139, R.145 Ligands: CU.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:T.139 Water bridges: A:A.142, A:R.145, A:R.145, A:R.145 Salt bridges: A:H.47, A:H.62, A:H.119, A:R.145 SO4.6: 6 residues within 4Å: Chain B: H.47, H.62, H.119, T.139, R.145 Ligands: CU.4 8 PLIP interactions: 8 interactions with chain B Water bridges: B:A.142, B:R.145, B:R.145, B:R.145 Salt bridges: B:H.47, B:H.62, B:H.119, B:R.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pakhomova, O.N. et al., X-ray Crystal Structure of C. elegans Cu,Zn Superoxide Dismutase. To be Published

Release Date

2010-11-03

Peptides

Superoxide dismutase [Cu-Zn]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Superoxide dismutase [Cu-Zn]

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