SMTL ID : 3kc2.1

Crystal structure of mitochondrial HAD-like phosphatase from Saccharomyces cerevisiae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 9 residues within 4Å: Chain A: D.19, I.20, D.21, T.52, N.53, G.54, K.246, D.298 Ligands: MG.3 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:D.19, A:I.20, A:D.21, A:N.53, A:G.54 Water bridges: A:T.52, A:N.53, A:D.206, A:D.206, A:K.246, A:S.302 Salt bridges: A:K.246 PO4.2: 3 residues within 4Å: Chain A: L.225, R.228 Chain B: R.229 9 PLIP interactions: 5 interactions with chain A, 4 interactions with chain B Water bridges: A:R.224, A:R.228, A:R.228, A:R.228, B:R.229, B:R.229, B:R.229 Salt bridges: A:R.228, B:R.229 PO4.5: 8 residues within 4Å: Chain B: D.19, I.20, D.21, T.52, N.53, G.54, K.246 Ligands: MG.4 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:D.19, B:I.20, B:D.21, B:D.21, B:T.52, B:N.53, B:G.54 Water bridges: B:N.53, B:D.206, B:K.246, B:S.302 Salt bridges: B:K.246 PO4.6: 3 residues within 4Å: Chain A: R.229 Chain B: L.225, R.228 8 PLIP interactions: 4 interactions with chain B, 4 interactions with chain A Water bridges: B:R.224, B:R.228, B:R.228, A:R.229, A:R.229, A:R.229 Salt bridges: B:R.228, A:R.229

3 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: D.19, D.21, D.298 Ligands: PO4.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.19, A:D.21, A:D.298, H2O.422, H2O.423 MG.4: 4 residues within 4Å: Chain B: D.19, D.21, D.298 Ligands: PO4.5 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.19, B:D.21, B:D.298, H2O.845, H2O.846 MG.7: 6 residues within 4Å: Chain A: G.134, L.135, Q.139 Chain B: G.134, L.135, Q.139 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:G.134, B:G.134, H2O.467, H2O.534

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nocek, B. et al., Crystal structure of mitochondrial HAD-like phosphatase from Saccharomyces cerevisiae. To be Published

Release Date

2009-11-24

Peptides

Uncharacterized protein YKR070W: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized protein YKR070W