SMTL ID : 3kcg.1

Crystal structure of the antithrombin-factor IXa-pentasaccharide complex

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.70 Å
Oligo State
hetero-1-1-1-mer
Ligands
2 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x Z9L- Z9K- GU6- GU1- Z9H: 3,4-di-O-methyl-2,6-di-O-sulfo-alpha-D-glucopyranose-(1-4)-2,3-di-O-methyl-beta-D-glucopyranuronic acid-(1-4)-2,3,6-tri-O-sulfo-alpha-D-glucopyranose-(1-4)-3-O-methyl-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-methyl 2,3,6-tri-O-sulfo-alpha-D-glucopyranoside(Post Translational Modification)
1 x CA: CALCIUM ION(Non-covalent)
2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Johnson, D.J. et al., Molecular basis of factor IXa recognition by heparin-activated antithrombin revealed by a 1.7-A structure of the ternary complex. Proc.Natl.Acad.Sci.USA (2010)
Release Date
2010-02-02
Peptides
Coagulation factor IXa light chain: A
Coagulation factor IXa heavy chain: B
Antithrombin-III: C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
L
B
H
C
I

Coagulation factor IXa light chain

Coagulation factor IXa heavy chain

Antithrombin-III

Related Entries With Identical Sequence

7ahv.1 | 8epc.1 | 8eph.1 | 8eph.2 | 8epk.1 | 8epk.2 | 8ol9.1