SMTL ID : 3kds.2 (1 other biounit)

apo-FtsH crystal structure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-hexamer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.278, H.282, D.355 Ligands: NHX.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.278, A:H.282, A:D.355 ZN.3: 4 residues within 4Å: Chain B: H.278, H.282, D.355 Ligands: NHX.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.278, B:H.282, B:D.355 ZN.5: 4 residues within 4Å: Chain C: H.278, H.282, D.355 Ligands: NHX.6 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.278, C:H.282, C:D.355 ZN.7: 4 residues within 4Å: Chain D: H.278, H.282, D.355 Ligands: NHX.8 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.278, D:H.282, D:D.355 ZN.9: 4 residues within 4Å: Chain E: H.278, H.282, D.355 Ligands: NHX.10 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:H.278, E:H.282, E:D.355 ZN.11: 4 residues within 4Å: Chain F: H.278, H.282, D.355 Ligands: NHX.12 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:H.278, F:H.282, F:D.355

6 x NHX: N-{(2R)-2-[2-(hydroxyamino)-2-oxoethyl]-4-methylpentanoyl}-3-naphthalen-2-yl-L-alanyl-L-alaninamide(Non-covalent)

NHX.2: 14 residues within 4Å: Chain A: H.278, E.279, H.282, K.306, A.307, L.308, G.309, S.350, G.351, A.353, D.355 Chain B: Y.320, L.321 Ligands: ZN.1 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:K.306, A:L.308, A:L.308, A:A.353, B:Y.320 Hydrogen bonds: A:L.308, A:G.309, A:G.309, B:Y.320 NHX.4: 14 residues within 4Å: Chain B: I.275, H.278, E.279, H.282, Y.305, K.306, A.307, L.308, G.309, G.351, N.354, D.355 Chain C: Y.320 Ligands: ZN.3 10 PLIP interactions: 8 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:I.275, B:K.306, B:A.307, B:N.354, C:Y.320 Hydrogen bonds: B:K.306, B:L.308, B:G.309, B:G.351, C:Y.320 NHX.6: 14 residues within 4Å: Chain C: H.278, E.279, H.282, K.306, A.307, L.308, G.309, S.350, G.351, A.353, D.355 Chain D: Y.320, L.321 Ligands: ZN.5 9 PLIP interactions: 7 interactions with chain C, 2 interactions with chain D Hydrophobic interactions: C:K.306, C:L.308, C:L.308, C:A.353, D:Y.320 Hydrogen bonds: C:L.308, C:G.309, C:G.309, D:Y.320 NHX.8: 14 residues within 4Å: Chain D: I.275, H.278, E.279, H.282, Y.305, K.306, A.307, L.308, G.309, G.351, N.354, D.355 Chain E: Y.320 Ligands: ZN.7 10 PLIP interactions: 2 interactions with chain E, 8 interactions with chain D Hydrophobic interactions: E:Y.320, D:I.275, D:K.306, D:A.307, D:N.354 Hydrogen bonds: E:Y.320, D:K.306, D:L.308, D:G.309, D:G.351 NHX.10: 14 residues within 4Å: Chain E: H.278, E.279, H.282, K.306, A.307, L.308, G.309, S.350, G.351, A.353, D.355 Chain F: Y.320, L.321 Ligands: ZN.9 9 PLIP interactions: 7 interactions with chain E, 2 interactions with chain F Hydrophobic interactions: E:K.306, E:L.308, E:L.308, E:A.353, F:Y.320 Hydrogen bonds: E:L.308, E:G.309, E:G.309, F:Y.320 NHX.12: 14 residues within 4Å: Chain A: Y.320 Chain F: I.275, H.278, E.279, H.282, Y.305, K.306, A.307, L.308, G.309, G.351, N.354, D.355 Ligands: ZN.11 10 PLIP interactions: 8 interactions with chain F, 2 interactions with chain A Hydrophobic interactions: F:I.275, F:K.306, F:A.307, F:N.354, A:Y.320 Hydrogen bonds: F:K.306, F:L.308, F:G.309, F:G.351, A:Y.320

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bieniossek, C. et al., The crystal structure of apo-FtsH reveals domain movements necessary for substrate unfolding and translocation. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-12-01

Peptides

Cell division protein FtsH: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
G

C
F

D
G

E
F

F
G

Cell division protein FtsH

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