SMTL ID : 3keh.2 (2 other biounits)

Crystal Structure of N370S Glucocerebrosidase mutant at pH 7.4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.19, T.21 No protein-ligand interaction detected (PLIP)

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: K.79, W.228, R.277, H.306 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.228 Salt bridges: A:K.79, A:R.277, A:H.306 SO4.3: 7 residues within 4Å: Chain A: Y.11, S.12, R.353, S.356, W.357, D.358 Chain B: S.242 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:S.242, A:S.12, A:S.12, A:D.358 Salt bridges: A:R.353 SO4.4: 3 residues within 4Å: Chain A: R.44, S.465, Y.487 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.487 Salt bridges: A:R.44 SO4.8: 3 residues within 4Å: Chain B: E.254, R.257, V.294 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.257 SO4.9: 3 residues within 4Å: Chain B: Q.169, R.170, P.428 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.169 Salt bridges: B:R.170 SO4.10: 6 residues within 4Å: Chain B: Y.11, S.12, R.353, S.356, W.357, D.358 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.12, B:S.12, B:S.12, B:W.357, B:D.358 Water bridges: B:S.356 Salt bridges: B:R.353 SO4.11: 4 residues within 4Å: Chain B: K.79, W.228, R.277, H.306 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:W.228 Salt bridges: B:K.79, B:R.277, B:H.306 SO4.12: 2 residues within 4Å: Chain B: R.329, L.330 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.329

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-functional Binders)

NAG.5: 2 residues within 4Å: Chain A: T.138, N.146 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.138 NAG.14: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 9 residues within 4Å: Chain A: D.127, F.128, W.179, N.234, E.235, F.246, E.340, W.381, N.396 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.179, A:N.234, A:N.234, A:W.381, A:N.396 GOL.13: 7 residues within 4Å: Chain B: R.2, D.24, S.25, F.26, R.48, M.49, Y.418 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.24, B:D.24

1 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)

NDG.7: 4 residues within 4Å: Chain B: I.5, N.19, T.21, Y.22 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.19, B:T.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, R.R. et al., Crystal Structure of Glucocerebrosidase Containing the N370S mutation: Implication on Chaperon Therapy. To be Published

Release Date

2010-10-27

Peptides

Glucocerebrosidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Glucocerebrosidase

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