SMTL ID : 3kez.1 (1 other biounit)

Crystal structure of Putative sugar binding protein (YP_001299726.1) from Bacteroides vulgatus ATCC 8482 at 1.90 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: N.261, Q.322, E.325, D.329, N.331 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:N.261, A:E.325, A:E.325, A:D.329, H2O.2

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 3 residues within 4Å: Chain A: N.434, F.435, H.436 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.436 Salt bridges: A:H.436

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 8 residues within 4Å: Chain A: G.135, Y.136, S.145, L.146, R.163, L.439, N.456, P.457 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.136, A:L.146 Water bridges: A:S.145 EDO.4: 5 residues within 4Å: Chain A: N.354, A.355, V.358, E.375, G.376 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.376 EDO.5: 1 residues within 4Å: Chain A: R.43 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.43, A:R.43 Water bridges: A:D.38 EDO.6: 4 residues within 4Å: Chain A: W.82, Y.86, P.161, E.446 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.446 Water bridges: A:W.82 EDO.7: 2 residues within 4Å: Chain A: D.432, N.434 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.432, A:N.434

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Putative sugar binding protein (YP_001299726.1) from Bacteroides vulgatus ATCC 8482 at 1.90 A resolution. To be published

Release Date

2009-11-10

Peptides

Putative sugar binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative sugar binding protein

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