SMTL ID : 3kfu.1

Crystal structure of the transamidosome

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-4-2-2-2-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain F: C.22, C.24, C.38, C.41 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.22, F:C.24, F:C.38, F:C.41 ZN.3: 4 residues within 4Å: Chain I: C.22, C.24, C.38, C.41 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.22, I:C.24, I:C.38, I:C.41

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain F: H.11, E.120, E.146 5 PLIP interactions: 3 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:H.11, F:E.120, F:E.146, H2O.1, H2O.1 MG.4: 3 residues within 4Å: Chain I: H.11, E.120, E.146 5 PLIP interactions: 2 interactions with chain I, 3 Ligand-Water interactions Metal complexes: I:H.11, I:E.146, H2O.1, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blaise, M. et al., Crystal structure of a transfer-ribonucleoprotein particle that promotes asparagine formation. Embo J. (2010)

Release Date

2010-08-25

Peptides

Non-discriminating and archaeal-type aspartyl-tRNA synthetase: ABCD
Glutamyl-tRNA(Gln) amidotransferase subunit A: EH
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B: FI
Glutamyl-tRNA(Gln) amidotransferase subunit C: GJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

H
H

F
F

I
I

G
G

J
J

Non-discriminating and archaeal-type aspartyl-tRNA synthetase

Glutamyl-tRNA(Gln) amidotransferase subunit A

Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B

Glutamyl-tRNA(Gln) amidotransferase subunit C

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