SMTL ID : 3kgw.1

Crystal structure of Putative aminotransferase (AAH25799.1) from MUS MUSCULUS at 1.65 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 14 residues within 4Å: Chain A: S.82, G.83, H.84, C.85, W.109, G.157, S.159, D.184, V.186, A.187, S.207, Q.209, K.210 Chain B: T.264 17 PLIP interactions: 16 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:H.84, A:W.109, A:V.186, A:A.187 Hydrogen bonds: A:H.84, A:H.84, A:C.85, A:S.159, A:S.159, A:S.207, A:Q.209, A:K.210, B:T.264 Salt bridges: A:H.84 pi-Stacking: A:W.109, A:W.109 pi-Cation interactions: A:H.84 PLP.7: 14 residues within 4Å: Chain A: H.263, T.264 Chain B: S.82, G.83, H.84, W.109, G.157, S.159, D.184, V.186, A.187, S.207, Q.209, K.210 14 PLIP interactions: 12 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:H.84, B:V.186, B:A.187 Hydrogen bonds: B:H.84, B:S.159, B:S.207, B:Q.209, B:K.210, A:T.264, A:T.264 Salt bridges: B:H.84 pi-Stacking: B:W.109, B:W.109 pi-Cation interactions: B:H.84

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: N.33, L.34 Chain B: R.45, M.46 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain A: R.45, M.46 Chain B: N.33, L.34 Ligand excluded by PLIP

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: R.291, E.294, T.371 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.371, A:T.371 Water bridges: A:E.294, A:T.371 EDO.4: 8 residues within 4Å: Chain A: F.92, L.95, E.96, P.97, I.120, R.234, P.238, V.239 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.234, A:R.234, A:V.239 Water bridges: A:T.236, A:K.237 EDO.5: 2 residues within 4Å: Chain A: V.124, H.125 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.124 EDO.6: 3 residues within 4Å: Chain A: P.166, L.167, D.168 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.167, A:D.168, A:D.168 Water bridges: A:H.156, A:Q.165, A:Q.199 EDO.9: 8 residues within 4Å: Chain B: F.92, L.95, E.96, P.97, I.120, R.234, P.238, V.239 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.234, B:R.234, B:V.239 Water bridges: B:T.236, B:K.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Putative aminotransferase (AAH25799.1) from MUS MUSCULUS at 1.65 A resolution. To be published

Release Date

2009-12-15

Peptides

Alanine-glyoxylate aminotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alanine-glyoxylate aminotransferase

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