SMTL ID : 3kgx.1

Crystal structure of Putative aminotransferase (AAH25799.1) from MUS MUSCULUS at 1.80 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: N.33, L.34 Chain B: R.45, M.46 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain A: R.45, M.46 Chain B: N.33, L.34 Ligand excluded by PLIP

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: H.298, H.302, D.375 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.298, A:H.302, A:D.375, H2O.3, H2O.4

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: E.294, T.371 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.371 Water bridges: A:T.371 EDO.4: 8 residues within 4Å: Chain A: F.92, L.95, E.96, P.97, I.120, R.234, P.238, V.239 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:F.92, A:R.234, A:R.234, A:V.239 Water bridges: A:T.236, A:K.237 EDO.5: 2 residues within 4Å: Chain A: V.124, H.125 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.124 Water bridges: A:R.123, A:V.124 EDO.6: 3 residues within 4Å: Chain A: P.166, L.167, D.168 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.167, A:D.168, A:D.168, A:Q.199 Water bridges: A:H.156, A:Q.165 EDO.7: 7 residues within 4Å: Chain A: E.88, F.92, S.240, T.243 Chain B: E.88, F.92, S.240 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.88, A:E.88, A:S.240, B:E.88 EDO.8: 3 residues within 4Å: Chain A: L.137, D.168, G.169 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.168, A:G.169 EDO.10: 8 residues within 4Å: Chain B: F.92, L.95, E.96, P.97, I.120, R.234, P.238, V.239 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.234, B:R.234, B:V.239 Water bridges: B:T.236 EDO.11: 4 residues within 4Å: Chain A: F.241 Chain B: I.108, M.111, R.112 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.112 EDO.12: 4 residues within 4Å: Chain B: P.166, L.167, D.168, Q.199 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:L.167, B:D.168, B:D.168, B:Q.199 Water bridges: B:H.156, B:Q.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Putative aminotransferase (AAH25799.1) from MUS MUSCULUS at 1.80 A resolution. To be published

Release Date

2009-11-10

Peptides

Alanine-glyoxylate aminotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alanine-glyoxylate aminotransferase

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