SMTL ID : 3kh5.1

Crystal Structure of Protein MJ1225 from Methanocaldococcus jannaschii, a putative archaeal homolog of g-AMPK.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: Q.10, K.13, I.14, V.15, Y.35, R.36, R.37, L.130, T.132, R.134, D.135, R.138, R.180 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:Q.10, A:V.15, A:V.15, A:R.36, A:T.132, A:T.132, A:R.138 Water bridges: A:R.36, A:R.37, A:T.132, A:E.272 Salt bridges: A:R.37, A:R.134, A:R.180 pi-Stacking: A:Y.35 ADP.3: 13 residues within 4Å: Chain A: R.37, I.51, T.53, M.55, D.56, E.91, V.94, I.95, V.115, G.116, G.117, P.119, R.180 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:R.37, A:D.56, A:I.95, A:I.95, A:G.116, A:G.117, A:R.180 Water bridges: A:R.36, A:R.36, A:S.54, A:D.56, A:K.66, A:N.114, A:V.115, A:E.133 Salt bridges: A:R.37, A:R.37, A:R.180 ADP.4: 15 residues within 4Å: Chain A: T.155, D.157, V.158, I.159, G.178, F.179, R.180, R.181, L.182, P.183, I.269, T.271, K.273, D.274, K.277 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:T.155, A:I.159, A:I.159, A:R.180, A:R.181, A:T.271, A:D.274, A:K.277, A:K.277 Water bridges: A:G.178, A:K.273, A:K.273 Salt bridges: A:R.181, A:K.273 pi-Stacking: A:F.179, A:F.179

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 13 residues within 4Å: Chain A: R.180, R.181, I.193, T.195, T.197, D.198, K.201, K.230, D.232, V.233, I.234, I.254, A.256 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:T.197, A:D.198, A:K.201, A:I.234, A:I.234 Water bridges: A:G.255, A:A.256 Salt bridges: A:R.180, A:R.181 AMP.5: 6 residues within 4Å: Chain A: S.65, N.68, L.69, E.72, K.73, E.88 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.69, A:E.72, A:E.72, A:K.73, A:E.88 Salt bridges: A:K.73

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 3 residues within 4Å: Chain A: T.162, P.163, G.164 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.162, A:T.162, A:G.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gomez-Garcia, I. et al., The crystal structure of protein MJ1225 from Methanocaldococcus jannaschii shows strong conservation of key structural features seen in the eukaryal gamma-AMPK. J.Mol.Biol. (2010)

Release Date

2010-04-21

Peptides

protein MJ1225: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

protein MJ1225

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