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SMTL ID : 3kh5.1
Crystal Structure of Protein MJ1225 from Methanocaldococcus jannaschii, a putative archaeal homolog of g-AMPK.
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.10 Å
Oligo State
monomer
Ligands
3 x
ADP
:
ADENOSINE-5'-DIPHOSPHATE
(Non-covalent)
ADP.1:
13 residues within 4Å:
Chain A:
Q.10
,
K.13
,
I.14
,
V.15
,
Y.35
,
R.36
,
R.37
,
L.130
,
T.132
,
R.134
,
D.135
,
R.138
,
R.180
15
PLIP interactions
:
15 interactions with chain A
Hydrogen bonds:
A:Q.10
,
A:V.15
,
A:V.15
,
A:R.36
,
A:T.132
,
A:T.132
,
A:R.138
Water bridges:
A:R.36
,
A:R.37
,
A:T.132
,
A:E.272
Salt bridges:
A:R.37
,
A:R.134
,
A:R.180
pi-Stacking:
A:Y.35
ADP.3:
13 residues within 4Å:
Chain A:
R.37
,
I.51
,
T.53
,
M.55
,
D.56
,
E.91
,
V.94
,
I.95
,
V.115
,
G.116
,
G.117
,
P.119
,
R.180
18
PLIP interactions
:
18 interactions with chain A
Hydrogen bonds:
A:R.37
,
A:D.56
,
A:I.95
,
A:I.95
,
A:G.116
,
A:G.117
,
A:R.180
Water bridges:
A:R.36
,
A:R.36
,
A:S.54
,
A:D.56
,
A:K.66
,
A:N.114
,
A:V.115
,
A:E.133
Salt bridges:
A:R.37
,
A:R.37
,
A:R.180
ADP.4:
15 residues within 4Å:
Chain A:
T.155
,
D.157
,
V.158
,
I.159
,
G.178
,
F.179
,
R.180
,
R.181
,
L.182
,
P.183
,
I.269
,
T.271
,
K.273
,
D.274
,
K.277
16
PLIP interactions
:
16 interactions with chain A
Hydrogen bonds:
A:T.155
,
A:I.159
,
A:I.159
,
A:R.180
,
A:R.181
,
A:T.271
,
A:D.274
,
A:K.277
,
A:K.277
Water bridges:
A:G.178
,
A:K.273
,
A:K.273
Salt bridges:
A:R.181
,
A:K.273
pi-Stacking:
A:F.179
,
A:F.179
2 x
AMP
:
ADENOSINE MONOPHOSPHATE
(Non-covalent)
AMP.2:
13 residues within 4Å:
Chain A:
R.180
,
R.181
,
I.193
,
T.195
,
T.197
,
D.198
,
K.201
,
K.230
,
D.232
,
V.233
,
I.234
,
I.254
,
A.256
9
PLIP interactions
:
9 interactions with chain A
Hydrogen bonds:
A:T.197
,
A:D.198
,
A:K.201
,
A:I.234
,
A:I.234
Water bridges:
A:G.255
,
A:A.256
Salt bridges:
A:R.180
,
A:R.181
AMP.5:
6 residues within 4Å:
Chain A:
S.65
,
N.68
,
L.69
,
E.72
,
K.73
,
E.88
6
PLIP interactions
:
6 interactions with chain A
Hydrogen bonds:
A:L.69
,
A:E.72
,
A:E.72
,
A:K.73
,
A:E.88
Salt bridges:
A:K.73
1 x
SO4
:
SULFATE ION
(Non-functional Binders)
SO4.6:
3 residues within 4Å:
Chain A:
T.162
,
P.163
,
G.164
3
PLIP interactions
:
3 interactions with chain A
Hydrogen bonds:
A:T.162
,
A:T.162
,
A:G.164
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Gomez-Garcia, I. et al., The crystal structure of protein MJ1225 from Methanocaldococcus jannaschii shows strong conservation of key structural features seen in the eukaryal gamma-AMPK. J.Mol.Biol. (2010)
Release Date
2010-04-21
Peptides
protein MJ1225:
A
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
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Secondary Structure
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DSSP
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Fade Mismatches
Enhance Mismatches
Chain
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2° Structure
Bfactor
Bfactor Range
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protein MJ1225
Related Entries With Identical Sequence
3lfz.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme