SMTL ID : 3khi.1

Crystal structure of a Putative Metal-dependent Hydrolase (YP_001336084.1) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578 at 1.95 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.113, V.117, H.150, H.154, E.213 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.113, A:H.150, A:H.154, A:E.213, A:E.213

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: F.223, R.252 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: T.63, P.64, L.65 Ligand excluded by PLIP

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: M.44, R.47, G.82, I.83 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.47, A:R.47, A:I.83 EDO.5: 5 residues within 4Å: Chain A: Q.51, K.52, D.87, F.89, H.90 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.52, A:H.90 EDO.6: 5 residues within 4Å: Chain A: A.97, P.98, F.99, L.131, N.132 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.99, A:N.132 EDO.7: 5 residues within 4Å: Chain A: F.145, H.150, D.204, V.217, E.220 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.150, A:D.204 EDO.8: 5 residues within 4Å: Chain A: L.49, Q.50, Q.51, K.52, R.53 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.49 Water bridges: A:R.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, Q. et al., The Structure of Mlc Titration Factor A (MtfA/YeeI) Reveals a Prototypical Zinc Metallopeptidase Related to Anthrax Lethal Factor. J.Bacteriol. (2012)

Release Date

2009-11-10

Peptides

Putative Metal-dependent Hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative Metal-dependent Hydrolase

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