SMTL ID : 3kih.1

The crystal structures of two fragments truncated from 5-bladed beta-propeller lectin, tachylectin-2 (Lib2-D2-15)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

homo-pentamer

Ligands

4 x GDL: 2-(acetylamido)-2-deoxy-D-glucono-1,5-lactone(Non-covalent)

GDL.1: 13 residues within 4Å: Chain A: G.47, D.48, G.49, G.50, W.51, Q.53, F.54, D.82, T.83, D.84, N.85, W.86, I.87 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.51, A:F.54 Hydrogen bonds: A:D.48, A:G.49, A:W.51, A:I.87 GDL.2: 11 residues within 4Å: Chain B: G.47, D.48, G.49, G.50, W.51, F.54, D.82, D.84, N.85, W.86, I.87 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:W.51, B:F.54 Hydrogen bonds: B:D.48, B:G.49, B:W.51, B:W.86, B:I.87 GDL.3: 11 residues within 4Å: Chain C: G.47, D.48, G.49, G.50, W.51, F.54, D.82, T.83, N.85, W.86, I.87 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:W.51, C:F.54, C:I.87 Hydrogen bonds: C:D.48, C:G.49, C:W.51, C:T.83, C:W.86, C:I.87 GDL.4: 11 residues within 4Å: Chain D: G.47, D.48, G.49, G.50, W.51, D.82, T.83, D.84, N.85, W.86, I.87 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:W.51 Hydrogen bonds: D:D.48, D:G.49, D:W.51, D:W.86, D:I.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yadid, I. et al., Metamorphic proteins mediate evolutionary transitions of structure. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-04-28

Peptides

5-bladed beta-propeller lectin: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

5-bladed beta-propeller lectin