SMTL ID : 3kiz.1

Crystal structure of Putative phosphoribosylformylglycinamidine cyclo-ligase (YP_676759.1) from CYTOPHAGA HUTCHINSONII ATCC 33406 at 1.50 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: S.107, I.109, G.146, G.147, E.148, T.149 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.148, A:T.149 Water bridges: A:S.107 ACT.2: 7 residues within 4Å: Chain A: K.29, Y.32, P.33, A.35, F.36, C.37, K.38 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.38 Hydrogen bonds: A:K.29, A:A.35 ACT.3: 5 residues within 4Å: Chain A: F.36, H.55, D.93, K.296, F.300 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.93 Water bridges: A:K.296 Salt bridges: A:K.296 ACT.7: 3 residues within 4Å: Chain B: D.101, G.139, K.273 4 PLIP interactions: 4 interactions with chain B Water bridges: B:K.273, B:K.273, B:K.273 Salt bridges: B:K.273

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: I.175, K.280, G.281, K.282, L.283 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.281, A:L.283, A:L.283 EDO.5: 6 residues within 4Å: Chain A: D.57, G.58, A.59, G.60, M.89, S.207 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.57 Water bridges: A:S.207, A:N.208, A:G.209, B:E.148 EDO.6: 4 residues within 4Å: Chain A: D.310, I.368, G.370, R.371 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.310, A:R.371 EDO.8: 2 residues within 4Å: Chain B: E.236, N.237 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.236 Water bridges: B:N.220 EDO.9: 1 residues within 4Å: Chain B: Q.194 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.194 Water bridges: B:Q.194, B:Q.194 EDO.10: 4 residues within 4Å: Chain B: W.70, G.74, I.76, E.119 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.74, B:E.119, B:E.119 EDO.11: 6 residues within 4Å: Chain B: D.57, G.58, A.59, G.60, M.89, S.207 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.57 Water bridges: B:S.207, B:N.208, B:G.209, A:E.148 EDO.12: 4 residues within 4Å: Chain B: D.310, I.368, G.370, R.371 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.310, B:R.371 EDO.13: 4 residues within 4Å: Chain B: F.36, H.55, D.93, K.296 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.296, B:K.296 Water bridges: B:H.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Putative phosphoribosylformylglycinamidine cyclo-ligase (YP_676759.1) from CYTOPHAGA HUTCHINSONII ATCC 33406 at 1.50 A resolution. To be published

Release Date

2009-11-17

Peptides

Phosphoribosylformylglycinamidine cyclo-ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phosphoribosylformylglycinamidine cyclo-ligase