SMTL ID : 3kj4.1 (1 other biounit)

Structure of rat Nogo receptor bound to 1D9 antagonist antibody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x MAN: alpha-D-mannopyranose(Non-functional Binders)

MAN.1: 1 residues within 4Å: Ligands: NDG.4 No protein-ligand interaction detected (PLIP)

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: S.97 Chain B: Y.102, W.106 No protein-ligand interaction detected (PLIP)

2 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)(Non-functional Binders)

NDG.3: 5 residues within 4Å: Chain C: A.31, S.32, R.55, N.56 Ligands: NDG.4 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:R.55 Hydrogen bonds: C:N.56 NDG.4: 2 residues within 4Å: Ligands: MAN.1, NDG.3 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.5: 2 residues within 4Å: Chain C: H.107, N.153 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weinreb, P.H. et al., Resolution of disulfide heterogeneity in Nogo receptor 1 fusion proteins by molecular engineering. Biotechnol Appl Biochem (2010)

Release Date

2010-09-22

Peptides

Fab fragment 1D9 light chain: A
Fab fragment 1D9 heavy chain: B
Reticulon-4 receptor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
A

Fab fragment 1D9 light chain

Fab fragment 1D9 heavy chain

Reticulon-4 receptor

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