SMTL ID : 3kji.2 (1 other biounit)

Zn and ADP bound state of CooC1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.112, C.114 Chain B: C.112, C.114 Ligands: ZN.3 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:C.112, A:C.114, B:C.112, B:C.114 ZN.3: 5 residues within 4Å: Chain A: C.112, C.114 Chain B: C.112, C.114 Ligands: ZN.1 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:C.112, A:C.114, B:C.112, B:C.114

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 17 residues within 4Å: Chain A: K.8, G.9, G.10, V.11, G.12, K.13, T.14, T.15, S.40, N.191, K.192, P.216, Y.217, N.218, F.221, I.222, S.225 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:K.8, A:G.10, A:V.11, A:G.12, A:K.13, A:T.14, A:T.14, A:T.15, A:T.15, A:S.40, A:S.40, A:N.191, A:K.192, A:K.192, A:P.216, A:N.218, A:S.225 Water bridges: A:K.8, A:K.13, A:K.13, A:T.15, A:D.37 Salt bridges: A:K.13 pi-Stacking: A:F.221 ADP.4: 17 residues within 4Å: Chain B: K.8, G.9, G.10, V.11, G.12, K.13, T.14, T.15, S.40, N.191, K.192, P.216, Y.217, N.218, F.221, I.222, S.225 23 PLIP interactions: 23 interactions with chain B Hydrogen bonds: B:K.8, B:G.10, B:V.11, B:G.12, B:K.13, B:T.14, B:T.15, B:T.15, B:S.40, B:S.40, B:N.191, B:K.192, B:K.192, B:P.216, B:N.218, B:S.225 Water bridges: B:K.8, B:K.13, B:K.13, B:T.15, B:D.37 Salt bridges: B:K.13 pi-Stacking: B:F.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeoung, J.H. et al., Crystal Structure of the ATP-Dependent Maturation Factor of Ni,Fe-Containing Carbon Monoxide Dehydrogenases. J.Mol.Biol. (2010)

Release Date

2010-01-19

Peptides

CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC

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