- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x DQ1: ethyl 4-(5-{[(2,4-diaminoquinazolin-6-yl)methyl]amino}-2-methoxyphenoxy)butanoate(Non-covalent)
DQ1.2: 19 residues within 4Å:- Chain A: V.26, V.27, A.28, I.41, W.43, N.44, V.45, D.48, M.49, F.52, T.80, I.84, P.85, F.88, L.91, I.154, Y.160, T.178
- Ligands: NAP.3
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:I.41, A:I.84, A:L.91
- Hydrogen bonds: A:Y.160, A:Y.160, A:T.178, A:T.178
- Water bridges: A:S.83, A:S.83, A:T.178
- Salt bridges: A:D.48
- pi-Stacking: A:F.52, A:F.52
DQ1.8: 18 residues within 4Å:- Chain B: V.26, V.27, A.28, I.41, W.43, N.44, V.45, D.48, M.49, F.52, T.80, I.84, P.85, L.91, I.154, Y.160, T.178
- Ligands: NAP.11
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:I.41, B:I.84, B:L.91
- Hydrogen bonds: B:V.26, B:V.27, B:Y.160, B:T.178
- Water bridges: B:S.83, B:S.83
- Salt bridges: B:D.48
- pi-Stacking: B:F.52, B:F.52
- 2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.3: 27 residues within 4Å:- Chain A: V.27, A.28, I.35, G.36, D.37, G.38, R.39, S.40, I.41, G.77, R.78, K.79, T.80, L.99, S.100, S.101, T.102, G.130, G.131, I.154, G.155, G.156, G.157, S.158, V.159, Y.160
- Ligands: DQ1.2
23 PLIP interactions:23 interactions with chain A- Hydrophobic interactions: A:I.41, A:T.80
- Hydrogen bonds: A:A.28, A:I.35, A:D.37, A:G.38, A:G.38, A:R.78, A:K.79, A:K.79, A:T.80, A:S.101, A:T.102, A:G.155, A:G.157, A:S.158, A:S.158, A:V.159
- Water bridges: A:S.83, A:G.131, A:E.162
- Salt bridges: A:R.78, A:K.79
NAP.11: 27 residues within 4Å:- Chain B: V.27, A.28, I.35, G.36, D.37, G.38, R.39, S.40, I.41, G.77, R.78, K.79, T.80, L.99, S.100, S.101, T.102, G.130, G.131, I.154, G.155, G.156, G.157, S.158, V.159, Y.160
- Ligands: DQ1.8
19 PLIP interactions:19 interactions with chain B- Hydrophobic interactions: B:I.41, B:T.80
- Hydrogen bonds: B:A.28, B:I.35, B:D.37, B:G.38, B:G.38, B:R.39, B:G.77, B:R.78, B:K.79, B:T.80, B:S.101, B:G.156, B:G.157, B:S.158, B:V.159
- Water bridges: B:S.83
- Salt bridges: B:R.78
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 4 residues within 4Å:- Chain A: E.295, I.316, W.317, N.320
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.320
EDO.6: 3 residues within 4Å:- Chain A: R.301, H.349, E.497
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.349
EDO.7: 5 residues within 4Å:- Chain A: I.211, S.212, E.213, E.214, Y.226
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.212
EDO.12: 5 residues within 4Å:- Chain B: I.211, S.212, E.213, E.214, Y.226
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.212
- Water bridges: B:E.214, B:E.214
EDO.13: 5 residues within 4Å:- Chain B: E.295, I.316, W.317, N.320, L.400
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.295, B:N.320
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schormann, N. et al., Synthesis and characterization of potent inhibitors of Trypanosoma cruzi dihydrofolate reductase. Bioorg.Med.Chem. (2010)
- Release Date
- 2010-06-09
- Peptides
- Dihydrofolate reductase-thymidylate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x DQ1: ethyl 4-(5-{[(2,4-diaminoquinazolin-6-yl)methyl]amino}-2-methoxyphenoxy)butanoate(Non-covalent)
- 2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schormann, N. et al., Synthesis and characterization of potent inhibitors of Trypanosoma cruzi dihydrofolate reductase. Bioorg.Med.Chem. (2010)
- Release Date
- 2010-06-09
- Peptides
- Dihydrofolate reductase-thymidylate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
C