SMTL ID : 3kkg.1

Crystal structure of Putative SnoaL-like polyketide cyclase (YP_509242.1) from Jannaschia Sp. CCS1 at 1.40 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: G.28, W.29, R.30 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain B: G.28, W.29, R.30 Ligand excluded by PLIP

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 2 residues within 4Å: Chain A: W.23, Y.129 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.115, A:T.115 PEG.3: 6 residues within 4Å: Chain A: S.5, E.8, E.81, G.82 Chain B: G.1, Q.2 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.5, A:E.8, B:Q.2 Water bridges: A:S.5, A:D.83 PEG.6: 2 residues within 4Å: Chain B: W.23, Y.129 1 PLIP interactions: 1 interactions with chain B Water bridges: B:T.115 PEG.7: 6 residues within 4Å: Chain A: G.1, Q.2 Chain B: S.5, E.8, E.81, G.82 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.2, B:S.5 Water bridges: B:S.5, B:D.83

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 4 residues within 4Å: Chain A: F.45, N.48, F.60, L.100 No protein-ligand interaction detected (PLIP) PGE.8: 4 residues within 4Å: Chain B: F.45, N.48, F.60, L.100 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Putative SnoaL-like polyketide cyclase (YP_509242.1) from Jannaschia Sp. CCS1 at 1.40 A resolution. To be published

Release Date

2009-12-01

Peptides

Putative SnoaL-like polyketide cyclase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Putative SnoaL-like polyketide cyclase