SMTL ID : 3kkq.1

Crystal structure of M-Ras P40D in complex with GDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 20 residues within 4Å: Chain A: D.26, G.27, G.28, V.29, G.30, K.31, S.32, A.33, F.43, V.44, D.45, Y.47, N.131, K.132, D.134, L.135, S.161, A.162, K.163 Ligands: MG.2 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:G.28, A:V.29, A:G.30, A:K.31, A:S.32, A:A.33, A:V.44, A:N.131, A:K.132, A:K.132, A:S.161, A:A.162, A:K.163 Water bridges: A:K.31, A:S.32, A:S.32, A:S.32, A:T.73 Salt bridges: A:K.31, A:D.134 pi-Stacking: A:F.43, A:F.43

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: S.32 Ligands: GDP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.32, H2O.1, H2O.1, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shima, F. et al., Structural basis for conformational dynamics of GTP-bound Ras protein. J.Biol.Chem. (2010)

Release Date

2010-06-16

Peptides

Ras-related protein M-Ras: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ras-related protein M-Ras

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