SMTL ID : 3kks.4 (3 other biounits)

Crystal structure of catalytic core domain of BIV integrase in crystal form II

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: C.113, E.114, T.115, A.118 Ligands: GOL.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.118 Hydrogen bonds: A:E.114, A:T.115 ACT.3: 5 residues within 4Å: Chain B: C.113, E.114, T.115, A.118 Ligands: GOL.4 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:A.118 Hydrogen bonds: B:E.114, B:T.115

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: D.112, C.113, A.118, L.122 Ligands: ACT.1 No protein-ligand interaction detected (PLIP) GOL.4: 5 residues within 4Å: Chain B: D.112, C.113, A.118, L.122 Ligands: ACT.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yao, X. et al., Crystal structures of catalytic core domain of BIV integrase: implications for the interaction between integrase and target DNA. Protein Cell (2010)

Release Date

2010-09-22

Peptides

Integrase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Integrase

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