SMTL ID : 3klc.1

Crystal structure of hyperthermophilic nitrilase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

13 x BR: BROMIDE ION(Non-covalent)

BR.1: 4 residues within 4Å: Chain A: F.107, G.109, K.110, R.132 Ligand excluded by PLIP BR.2: 3 residues within 4Å: Chain A: E.15, D.17, K.18 Ligand excluded by PLIP BR.3: 5 residues within 4Å: Chain A: Y.82, G.103, P.104, R.105, I.108 Ligand excluded by PLIP BR.4: 2 residues within 4Å: Chain A: K.3, G.34 Ligand excluded by PLIP BR.5: 3 residues within 4Å: Chain A: R.132, V.133, K.161 Ligand excluded by PLIP BR.6: 5 residues within 4Å: Chain A: P.152, E.153 Chain B: P.152, E.153, F.261 Ligand excluded by PLIP BR.8: 5 residues within 4Å: Chain A: W.149, L.172, V.173, M.174 Ligands: ACY.7 Ligand excluded by PLIP BR.9: 5 residues within 4Å: Chain B: Y.82, G.103, P.104, R.105, G.106 Ligand excluded by PLIP BR.10: 4 residues within 4Å: Chain B: F.107, G.109, K.110, R.132 Ligand excluded by PLIP BR.11: 2 residues within 4Å: Chain B: S.21, K.22 Ligand excluded by PLIP BR.12: 2 residues within 4Å: Chain B: M.174, P.175 Ligand excluded by PLIP BR.13: 2 residues within 4Å: Chain B: A.233, E.234 Ligand excluded by PLIP BR.15: 5 residues within 4Å: Chain B: W.149, L.172, V.173, M.174 Ligands: ACY.14 Ligand excluded by PLIP

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.7: 7 residues within 4Å: Chain A: C.146, F.147, W.149, L.172, V.173, M.174 Ligands: BR.8 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.172 Hydrogen bonds: A:V.173, A:M.174 ACY.14: 6 residues within 4Å: Chain B: C.146, W.149, L.172, V.173, M.174 Ligands: BR.15 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.149, B:V.173, B:M.174

1 x MG: MAGNESIUM ION(Non-covalent)

MG.16: 4 residues within 4Å: Chain B: K.253, R.255, R.256, E.257 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.257, H2O.5, H2O.5, H2O.7, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Raczynska, J.E. et al., Crystallographic analysis of a thermoactive nitrilase. J.Struct.Biol. (2010)

Release Date

2010-11-24

Peptides

Beta ureidopropionase (Beta-alanine synthase): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta ureidopropionase (Beta-alanine synthase)

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