SMTL ID : 3klo.1 (1 other biounit)

Vibrio cholerae VpsT bound to c-di-GMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x C2E: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)(Non-covalent)

C2E.1: 5 residues within 4Å: Chain A: K.121, M.131, W.132, T.134, R.135 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.121, A:M.131, A:T.134, A:R.135, A:R.135 pi-Stacking: A:W.132 C2E.2: 6 residues within 4Å: Chain B: K.121, M.131, W.132, T.134, R.135 Ligands: TAR.3 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:K.121, B:M.131, B:T.134, B:T.134, B:R.135, B:R.135 Water bridges: B:T.134, B:T.134 pi-Stacking: B:W.132

1 x TAR: D(-)-TARTARIC ACID(Non-covalent)

TAR.3: 3 residues within 4Å: Chain B: K.125, E.130 Ligands: C2E.2 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.130 Salt bridges: B:K.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krasteva, P.V. et al., Vibrio cholerae VpsT Regulates Matrix Production and Motility by Directly Sensing Cyclic di-GMP. Science (2010)

Release Date

2010-02-09

Peptides

Transcriptional regulator VpsT: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transcriptional regulator VpsT

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