SMTL ID : 3klv.1

M296I G62S mutant of foot-and-mouth disease virus RNA-polymerase in complex with a template- primer RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x A- U- G- G- G- C- C: RNA (5'-R(*AP*UP*GP*GP*GP*CP*C)-3')(Non-covalent)

A-U-G-G-G-C-C.1: 31 residues within 4Å: Chain A: R.17, G.107, L.108, D.109, T.115, A.116, R.128, F.162, K.164, D.165, V.181, V.183, I.189, R.193, H.204, V.215, G.216, C.217, N.218, G.299, C.300, S.301, A.302, T.303, Y.336, R.416 Ligands: G-G-C-C-C.2, G-G-C-C-C.2, G-G-C-C-C.2, G-G-C-C-C.2, G-G-C-C-C.2 Protein-ligand interaction information (PLIP) not available

1 x G- G- C- C- C: RNA (5'-R(*GP*GP*CP*CP*C)-3')(Non-covalent)

G-G-C-C-C.2: 18 residues within 4Å: Chain A: S.304, Y.336, D.338, D.339, L.386, K.387, R.388, I.411, R.416, T.419, E.422, K.423, S.426 Ligands: A-U-G-G-G-C-C.1, A-U-G-G-G-C-C.1, A-U-G-G-G-C-C.1, A-U-G-G-G-C-C.1, A-U-G-G-G-C-C.1 Protein-ligand interaction information (PLIP) not available

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: D.63, E.293 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.63, A:E.293 MG.4: 4 residues within 4Å: Chain A: D.238, D.240, D.339, T.384 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.238, A:D.339

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrer-Orta, C. et al., Structure of foot-and-mouth disease virus mutant polymerases with reduced sensitivity to ribavirin. J.Virol. (2010)

Release Date

2010-07-07

Peptides

3D polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3D polymerase