SMTL ID : 3km3.1

Crystal structure of eoxycytidine triphosphate deaminase from anaplasma phagocytophilum at 2.1A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-hexamer

Ligands

48 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: D.27, H.28 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain A: E.32 Ligand excluded by PLIP IOD.3: 1 residues within 4Å: Chain A: F.98 Ligand excluded by PLIP IOD.4: 1 residues within 4Å: Chain A: K.71 Ligand excluded by PLIP IOD.5: 3 residues within 4Å: Chain A: V.126, G.127 Chain C: T.141 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain A: K.110, G.149, Y.150 Ligand excluded by PLIP IOD.7: 2 residues within 4Å: Chain E: M.25, P.26 Ligand excluded by PLIP IOD.8: 3 residues within 4Å: Chain A: R.94, C.99, I.100 Ligand excluded by PLIP IOD.9: 1 residues within 4Å: Chain B: L.57 Ligand excluded by PLIP IOD.10: 2 residues within 4Å: Chain B: M.25, H.28 Ligand excluded by PLIP IOD.11: 2 residues within 4Å: Chain B: K.71, K.110 Ligand excluded by PLIP IOD.12: 1 residues within 4Å: Chain B: F.98 Ligand excluded by PLIP IOD.13: 3 residues within 4Å: Chain B: V.126, G.127 Chain F: T.141 Ligand excluded by PLIP IOD.14: 1 residues within 4Å: Chain B: E.32 Ligand excluded by PLIP IOD.15: 2 residues within 4Å: Chain B: K.71, Q.88 Ligand excluded by PLIP IOD.16: 2 residues within 4Å: Chain B: R.94, I.100 Ligand excluded by PLIP IOD.17: 2 residues within 4Å: Chain C: D.27, H.28 Ligand excluded by PLIP IOD.18: 1 residues within 4Å: Chain C: E.32 Ligand excluded by PLIP IOD.19: 1 residues within 4Å: Chain C: F.98 Ligand excluded by PLIP IOD.20: 1 residues within 4Å: Chain C: K.71 Ligand excluded by PLIP IOD.21: 3 residues within 4Å: Chain C: V.126, G.127 Chain E: T.141 Ligand excluded by PLIP IOD.22: 3 residues within 4Å: Chain C: K.110, G.149, Y.150 Ligand excluded by PLIP IOD.23: 2 residues within 4Å: Chain A: M.25, P.26 Ligand excluded by PLIP IOD.24: 3 residues within 4Å: Chain C: R.94, C.99, I.100 Ligand excluded by PLIP IOD.25: 1 residues within 4Å: Chain D: L.57 Ligand excluded by PLIP IOD.26: 2 residues within 4Å: Chain D: M.25, H.28 Ligand excluded by PLIP IOD.27: 2 residues within 4Å: Chain D: K.71, K.110 Ligand excluded by PLIP IOD.28: 1 residues within 4Å: Chain D: F.98 Ligand excluded by PLIP IOD.29: 3 residues within 4Å: Chain B: T.141 Chain D: V.126, G.127 Ligand excluded by PLIP IOD.30: 1 residues within 4Å: Chain D: E.32 Ligand excluded by PLIP IOD.31: 2 residues within 4Å: Chain D: K.71, Q.88 Ligand excluded by PLIP IOD.32: 2 residues within 4Å: Chain D: R.94, I.100 Ligand excluded by PLIP IOD.33: 2 residues within 4Å: Chain E: D.27, H.28 Ligand excluded by PLIP IOD.34: 1 residues within 4Å: Chain E: E.32 Ligand excluded by PLIP IOD.35: 1 residues within 4Å: Chain E: F.98 Ligand excluded by PLIP IOD.36: 1 residues within 4Å: Chain E: K.71 Ligand excluded by PLIP IOD.37: 3 residues within 4Å: Chain A: T.141 Chain E: V.126, G.127 Ligand excluded by PLIP IOD.38: 3 residues within 4Å: Chain E: K.110, G.149, Y.150 Ligand excluded by PLIP IOD.39: 2 residues within 4Å: Chain C: M.25, P.26 Ligand excluded by PLIP IOD.40: 3 residues within 4Å: Chain E: R.94, C.99, I.100 Ligand excluded by PLIP IOD.41: 1 residues within 4Å: Chain F: L.57 Ligand excluded by PLIP IOD.42: 2 residues within 4Å: Chain F: M.25, H.28 Ligand excluded by PLIP IOD.43: 2 residues within 4Å: Chain F: K.71, K.110 Ligand excluded by PLIP IOD.44: 1 residues within 4Å: Chain F: F.98 Ligand excluded by PLIP IOD.45: 3 residues within 4Å: Chain D: T.141 Chain F: V.126, G.127 Ligand excluded by PLIP IOD.46: 1 residues within 4Å: Chain F: E.32 Ligand excluded by PLIP IOD.47: 2 residues within 4Å: Chain F: K.71, Q.88 Ligand excluded by PLIP IOD.48: 2 residues within 4Å: Chain F: R.94, I.100 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., SAD phasing using iodide ions in a high-throughput structural genomics environment. J.Struct.Funct.Genom. (2011)

Release Date

2009-11-24

Peptides

Deoxycytidine triphosphate deaminase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Deoxycytidine triphosphate deaminase