SMTL ID : 3kms.1

G62S mutant of foot-and-mouth disease virus RNA-polymerase in complex with a template- primer RNA trigonal structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x A- U- G- G- G- C- C: RNA (5'-R(*AP*UP*GP*GP*GP*CP*C)-3')(Non-covalent)

A-U-G-G-G-C-C.1: 33 residues within 4Å: Chain A: R.17, K.20, G.107, L.108, D.109, T.115, A.116, R.128, F.162, K.164, D.165, V.181, I.189, R.193, H.204, V.215, G.216, C.217, N.218, S.298, G.299, C.300, S.301, A.302, T.303, S.304, Y.336, R.416 Ligands: G-G-C-C-C.2, G-G-C-C-C.2, G-G-C-C-C.2, G-G-C-C-C.2, G-G-C-C-C.2 Protein-ligand interaction information (PLIP) not available

1 x G- G- C- C- C: RNA (5'-R(*GP*GP*CP*CP*C)-3')(Non-covalent)

G-G-C-C-C.2: 23 residues within 4Å: Chain A: K.164, S.304, Y.336, G.337, D.338, D.339, L.386, K.387, R.388, M.403, I.411, R.416, T.419, E.422, K.423, S.426, L.430 Ligands: A-U-G-G-G-C-C.1, A-U-G-G-G-C-C.1, A-U-G-G-G-C-C.1, A-U-G-G-G-C-C.1, A-U-G-G-G-C-C.1, A-U-G-G-G-C-C.1 Protein-ligand interaction information (PLIP) not available

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: D.238, D.240, D.339, A.367, T.384 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.238, A:D.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrer-Orta, C. et al., Structure of foot-and-mouth disease virus mutant polymerases with reduced sensitivity to ribavirin. J.Virol. (2010)

Release Date

2010-07-07

Peptides

3D polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3D polymerase

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