SMTL ID : 3koa.1

M296I mutant of foot-and-mouth disease virus RNA-polymerase in complex with a template- primer RNA and GTP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x A- U- G- G- G- C: RNA (5'-R(P*AP*UP*GP*GP*GP*C)-3')(Non-covalent)

A-U-G-G-G-C.1: 30 residues within 4Å: Chain A: G.107, L.108, D.109, E.112, T.115, A.116, R.128, K.164, V.181, D.182, V.183, L.184, I.189, R.193, H.204, V.215, G.216, C.217, N.218, S.298, G.299, C.300, S.301, A.302, T.303, Y.336 Ligands: C-C-C-G.2, C-C-C-G.2, C-C-C-G.2, C-C-C-G.2 Protein-ligand interaction information (PLIP) not available

1 x C- C- C- G: RNA (5'-R(P*CP*CP*CP*G)-3')(Non-covalent)

C-C-C-G.2: 21 residues within 4Å: Chain A: S.304, Y.336, G.337, D.338, D.339, L.386, K.387, R.388, M.403, I.411, R.416, T.419, K.423, S.426, V.427, L.430 Ligands: A-U-G-G-G-C.1, A-U-G-G-G-C.1, A-U-G-G-G-C.1, A-U-G-G-G-C.1, DPO.5 Protein-ligand interaction information (PLIP) not available

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: D.238, D.240, D.339, T.384 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.238, H2O.1 MG.4: 2 residues within 4Å: Chain A: Y.241, D.338 No protein-ligand interaction detected (PLIP)

1 x DPO: DIPHOSPHATE(Non-covalent)

DPO.5: 8 residues within 4Å: Chain A: F.34, E.166, I.167, R.168, P.169, R.179, K.387 Ligands: C-C-C-G.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.166, A:I.167, A:R.168 Water bridges: A:I.167 Salt bridges: A:R.179, A:K.387, A:K.387

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrer-Orta, C. et al., Structure of foot-and-mouth disease virus mutant polymerases with reduced sensitivity to ribavirin. J.Virol. (2010)

Release Date

2010-07-07

Peptides

3D polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3D polymerase

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