SMTL ID : 3kpc.1

Crystal Structure of the CBS domain pair of protein MJ0100 in complex with 5 -methylthioadenosine and S-adenosyl-L-methionine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

homo-dimer

Ligands

2 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 17 residues within 4Å: Chain A: I.49, T.51, W.53, D.54, T.71, N.73, V.74, I.75, N.94, I.95, S.96, G.97, V.98, P.99 Chain B: N.33, N.35, E.114 11 PLIP interactions: 8 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:D.54, A:T.71, A:I.75, A:I.75, B:N.35, B:N.35, B:E.114 Water bridges: A:N.94, A:S.96, A:G.97 pi-Cation interactions: A:W.53 SAM.3: 17 residues within 4Å: Chain A: N.33, N.35, E.114 Chain B: I.49, T.51, W.53, D.54, T.71, N.73, V.74, I.75, N.94, I.95, S.96, G.97, V.98, P.99 11 PLIP interactions: 3 interactions with chain A, 8 interactions with chain B Hydrogen bonds: A:N.35, A:N.35, A:E.114, B:D.54, B:T.71, B:I.75, B:I.75 Water bridges: B:N.94, B:S.96, B:G.97 pi-Cation interactions: B:W.53

2 x MTA: 5'-DEOXY-5'-METHYLTHIOADENOSINE(Non-covalent)

MTA.2: 13 residues within 4Å: Chain A: S.10, P.12, P.13, I.14, N.33, I.34, N.35, H.36, P.38, I.110, T.112, E.114, D.115 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:S.10, A:I.14, A:I.14, A:T.112, A:D.115, A:D.115, A:R.118 Water bridges: A:S.10, A:E.114, A:E.114, A:R.118, A:R.118 MTA.4: 13 residues within 4Å: Chain B: S.10, P.12, P.13, I.14, N.33, I.34, N.35, H.36, P.38, I.110, T.112, E.114, D.115 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:S.10, B:I.14, B:I.14, B:T.112, B:D.115, B:D.115, B:R.118 Water bridges: B:S.10, B:E.114, B:E.114, B:R.118, B:R.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lucas, M. et al., Binding of S-Methyl-5'-Thioadenosine and S-Adenosyl-l-Methionine to Protein MJ0100 Triggers an Open-to-Closed Conformational Change in Its CBS Motif Pair. J.Mol.Biol. (2010)

Release Date

2010-01-12

Peptides

Uncharacterized protein MJ0100: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Uncharacterized protein MJ0100