- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.77 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FE: FE (III) ION(Non-covalent)
- 2 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)
AKG.2: 12 residues within 4Å:- Chain A: L.137, H.140, D.142, I.152, Y.154, L.170, H.208, V.210, R.219, Q.223, W.225
- Ligands: FE.1
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:L.137, A:I.152
- Hydrogen bonds: A:Y.154, A:S.221, A:Q.223
- Salt bridges: A:H.140, A:R.219
AKG.9: 12 residues within 4Å:- Chain B: L.137, H.140, D.142, I.152, Y.154, L.170, H.208, V.210, R.219, Q.223, W.225
- Ligands: FE.8
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:L.137, B:I.152
- Hydrogen bonds: B:S.221, B:Q.223
- Salt bridges: B:H.140, B:R.219
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 5 residues within 4Å:- Chain A: A.525, G.526, W.527, E.528, S.529
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.526, A:E.528, A:S.529, A:S.529
- Water bridges: A:W.527, A:W.527
SO4.4: 3 residues within 4Å:- Chain A: K.133, V.215, D.216
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.216
- Salt bridges: A:K.133
SO4.5: 3 residues within 4Å:- Chain A: R.160, K.161, K.163
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.161
- Water bridges: A:K.161
- Salt bridges: A:R.160, A:K.163
SO4.6: 3 residues within 4Å:- Chain A: K.161, K.163, S.164
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.164
- Water bridges: A:K.161, A:H.165, A:H.165
- Salt bridges: A:K.161
SO4.10: 5 residues within 4Å:- Chain B: A.525, G.526, W.527, E.528, S.529
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:G.526, B:E.528, B:S.529, B:S.529
- Water bridges: B:W.527, B:W.527
SO4.11: 3 residues within 4Å:- Chain B: K.133, V.215, D.216
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.216
- Salt bridges: B:K.133
SO4.12: 3 residues within 4Å:- Chain B: R.160, K.161, K.163
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.161
- Water bridges: B:K.161
- Salt bridges: B:R.160, B:K.163
SO4.13: 3 residues within 4Å:- Chain B: K.161, K.163, S.164
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:S.164
- Water bridges: B:K.161, B:H.165, B:H.165
- Salt bridges: B:K.161
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 3 residues within 4Å:- Chain A: Y.403, R.404, N.405
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.405
- Water bridges: A:R.404, A:D.411, A:D.411, A:D.411
GOL.14: 3 residues within 4Å:- Chain B: Y.403, R.404, N.405
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.405
- Water bridges: B:R.404, B:D.411, B:D.411
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, H.S. et al., Crystal structure of Tpa1 from Saccharomyces cerevisiae, a component of the messenger ribonucleoprotein complex. Nucleic Acids Res. (2010)
- Release Date
- 2010-01-19
- Peptides
- PKHD-type hydroxylase TPA1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.77 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FE: FE (III) ION(Non-covalent)
- 2 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, H.S. et al., Crystal structure of Tpa1 from Saccharomyces cerevisiae, a component of the messenger ribonucleoprotein complex. Nucleic Acids Res. (2010)
- Release Date
- 2010-01-19
- Peptides
- PKHD-type hydroxylase TPA1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A